RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	IRC10	Q08118	586 aa		6.05	□□□□□ -1.44
RRP40	YOL142W	DIA2	Q08496	732 aa	Predicted RBP	6.05	□□□□□ -1.44
RRP40	YOL142W	TY3B-I	Q7LHG5	1498 aa	Known RBP	6.04	□□□□□ -1.44
RRP40	YOL142W	IMG2	P25642	146 aa	Predicted RBP	6.04	□□□□□ -1.44
RRP40	YOL142W	PHO11	P35842	467 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	PHO12	P38693	467 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	BFA1	P47113	574 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	YGR153W	P48238	217 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	FHN1	P53279	174 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	SMX3	P54999	86 aa	Predicted RBP	6.04	□□□□□ -1.44
RRP40	YOL142W	THI22	Q06490	572 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	VHS3	Q08438	674 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	ZRT2	Q12436	422 aa		6.04	□□□□□ -1.44
RRP40	YOL142W	RAD9	P14737	1309 aa		6.03	□□□□□ -1.44
RRP40	YOL142W	MLP1	Q02455	1875 aa	Known RBP	6.03	□□□□□ -1.44
RRP40	YOL142W	CCT5	P40413	562 aa	Known RBP	6.03	□□□□□ -1.44
RRP40	YOL142W	YGR237C	P50089	785 aa		6.03	□□□□□ -1.44
RRP40	YOL142W	YLR407W	Q06070	228 aa		6.03	□□□□□ -1.44
RRP40	YOL142W	VPS36	Q06696	566 aa		6.03	□□□□□ -1.44
RRP40	YOL142W	MLH3	Q12083	715 aa		6.03	□□□□□ -1.44
RRP40	YOL142W	MRH1	Q12117	320 aa	Predicted RBP	6.03	□□□□□ -1.44
RRP40	YOL142W	YRF1-2	P40105	1681 aa		6.02	□□□□□ -1.45
RRP40	YOL142W	YKU70	P32807	602 aa		6.02	□□□□□ -1.45
RRP40	YOL142W	GZF3	P42944	551 aa	Known RBP	6.02	□□□□□ -1.45
RRP40	YOL142W	QRI1	P43123	477 aa	Known RBP	6.02	□□□□□ -1.45
RRP40	YOL142W	STU2	P46675	888 aa		6.02	□□□□□ -1.45
RRP40	YOL142W	ECM9	Q02202	377 aa		6.02	□□□□□ -1.45
RRP40	YOL142W	YMR210W	Q03649	449 aa		6.02	□□□□□ -1.45
RRP40	YOL142W	YTM1	Q12024	460 aa	Predicted RBP	6.02	□□□□□ -1.45
RRP40	YOL142W	RPS21B	Q3E754	87 aa	Known RBP	6.02	□□□□□ -1.45
RRP40	YOL142W	RRP5	Q05022	1729 aa	Known RBP	6.02	□□□□□ -1.45
RRP40	YOL142W	ERG20	P08524	352 aa	Known RBP	6.01	□□□□□ -1.45
RRP40	YOL142W	SWI6	P09959	803 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	FRS1	P15624	595 aa	Known RBP	6.01	□□□□□ -1.45
RRP40	YOL142W	PET127	P32606	800 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	BCS1	P32839	456 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	SEC6	P32844	805 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	YPT7	P32939	208 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	BIT2	P38346	545 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	GPP1	P41277	250 aa	Known RBP	6.01	□□□□□ -1.45
RRP40	YOL142W	CLF1	Q12309	687 aa	Predicted RBP	6.01	□□□□□ -1.45
RRP40	YOL142W	YIL177C	P40434	1758 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	YJL225C	P40889	1758 aa		6.01	□□□□□ -1.45
RRP40	YOL142W	THR1	P17423	357 aa	Known RBP	6	□□□□□ -1.45
RRP40	YOL142W	HXT6	P39003	570 aa	Known RBP	6	□□□□□ -1.45
RRP40	YOL142W	HXT7	P39004	570 aa		6	□□□□□ -1.45
RRP40	YOL142W	OAF1	P39720	1047 aa	Predicted RBP	6	□□□□□ -1.45
RRP40	YOL142W	PIG2	P40187	538 aa		6	□□□□□ -1.45
RRP40	YOL142W	NDC80	P40460	691 aa		6	□□□□□ -1.45
RRP40	YOL142W	HFD1	Q04458	532 aa		6	□□□□□ -1.45
RRP40	YOL142W	FAP7	Q12055	197 aa	Predicted RBP	6	□□□□□ -1.45
RRP40	YOL142W	POM34	Q12445	299 aa		6	□□□□□ -1.45
RRP40	YOL142W	TAD3	Q9URQ3	322 aa		6	□□□□□ -1.45
RRP40	YOL142W	KIN3	P22209	435 aa		5.99	□□□□□ -1.45
RRP40	YOL142W	BIT61	P47041	543 aa		5.99	□□□□□ -1.45
RRP40	YOL142W	RCR2	Q03446	210 aa	Known RBP	5.99	□□□□□ -1.45
RRP40	YOL142W	YPS7	Q06325	596 aa		5.99	□□□□□ -1.45
RRP40	YOL142W	CDC43	P18898	376 aa		5.98	□□□□□ -1.45
RRP40	YOL142W	PRP28	P23394	588 aa		5.98	□□□□□ -1.45
RRP40	YOL142W	UBP12	P39538	1254 aa		5.98	□□□□□ -1.45
RRP40	YOL142W	ARG2	P40360	574 aa		5.98	□□□□□ -1.45
RRP40	YOL142W	MNN11	P46985	422 aa	Known RBP	5.98	□□□□□ -1.45
RRP40	YOL142W	YGL081W	P53156	320 aa		5.98	□□□□□ -1.45
RRP40	YOL142W	ATG4	P53867	494 aa		5.98	□□□□□ -1.45
RRP40	YOL142W	CHS5	Q12114	671 aa	Known RBP	5.98	□□□□□ -1.45
RRP40	YOL142W	USV1	Q12132	391 aa		5.98	□□□□□ -1.45
RRP40	YOL142W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	5.98	□□□□□ -1.45	not detected
RRP40	YOL142W	IME1	P21190	360 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	FEN2	P25621	512 aa	Known RBP	5.97	□□□□□ -1.45
RRP40	YOL142W	SEC65	P29478	273 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	OAF3	P36023	863 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	UBS1	P38290	277 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	YJL206C	P39529	758 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	YIL077C	P40508	320 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	CCT7	P42943	550 aa	Known RBP	5.97	□□□□□ -1.45
RRP40	YOL142W	NOP15	P53927	220 aa	Predicted RBP	5.97	□□□□□ -1.45
RRP40	YOL142W	YHM2	Q04013	314 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	VBA4	Q04602	768 aa	Known RBP	5.97	□□□□□ -1.45
RRP40	YOL142W	HFI1	Q12060	488 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	TAF3	Q12297	353 aa		5.97	□□□□□ -1.45
RRP40	YOL142W	RPS17A	P02407	136 aa	Known RBP	5.96	□□□□□ -1.46
RRP40	YOL142W	RPS17B	P14127	136 aa	Known RBP	5.96	□□□□□ -1.46
RRP40	YOL142W	KIN82	P25341	720 aa		5.96	□□□□□ -1.46
RRP40	YOL142W	DID4	P36108	232 aa		5.96	□□□□□ -1.46
RRP40	YOL142W	RFX1	P48743	811 aa		5.96	□□□□□ -1.46
RRP40	YOL142W	CTR1	P49573	406 aa		5.96	□□□□□ -1.46
RRP40	YOL142W	RPS21A	P0C0V8	87 aa	Known RBP	5.95	□□□□□ -1.46
RRP40	YOL142W	SEC15	P22224	910 aa		5.95	□□□□□ -1.46
RRP40	YOL142W	SET3	P36124	751 aa		5.95	□□□□□ -1.46
RRP40	YOL142W	GLG1	P36143	616 aa		5.95	□□□□□ -1.46
RRP40	YOL142W	VPS73	P53142	486 aa	Known RBP	5.95	□□□□□ -1.46
RRP40	YOL142W	YLR419W	Q06698	1435 aa	Known RBP	5.95	□□□□□ -1.46
RRP40	YOL142W	STP4	Q07351	490 aa		5.95	□□□□□ -1.46
RRP40	YOL142W	APM4	Q99186	491 aa		5.95	□□□□□ -1.46
RRP40	YOL142W	RPS9B	P05755	195 aa	Known RBP	5.94	□□□□□ -1.46
RRP40	YOL142W	ESL2	P36168	1195 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	FAT1	P38225	669 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	COS111	P38308	924 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	TDP1	P38319	544 aa		5.94	□□□□□ -1.46
RRP40	YOL142W	BDH2	P39713	417 aa		5.94	□□□□□ -1.46

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms