RNA–Protein interactions for RNA: YLR147C

SMD3, Transcript of Core Sm protein Sm D3, yeast

Gene SMD3, Length 306 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMD3	YLR147C	RIX1	P38883	763 aa	Predicted RBP	4.9	□□□□□ -1.63
SMD3	YLR147C	TMN3	P40071	706 aa		4.9	□□□□□ -1.63
SMD3	YLR147C	FTR1	P40088	404 aa		4.9	□□□□□ -1.63
SMD3	YLR147C	ATF1	P40353	525 aa		4.9	□□□□□ -1.63
SMD3	YLR147C	PRM2	P40534	656 aa		4.9	□□□□□ -1.63
SMD3	YLR147C	DIP5	P53388	608 aa		4.9	□□□□□ -1.63
SMD3	YLR147C	APM1	Q00776	475 aa	Predicted RBP	4.9	□□□□□ -1.63
SMD3	YLR147C	FDC1	Q03034	503 aa		4.9	□□□□□ -1.63
SMD3	YLR147C	ARO10	Q06408	635 aa		4.9	□□□□□ -1.63
SMD3	YLR147C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
SMD3	YLR147C	PHO5	P00635	467 aa		4.89	□□□□□ -1.63
SMD3	YLR147C	ATP12	P22135	325 aa		4.89	□□□□□ -1.63
SMD3	YLR147C	ELF1	P36053	145 aa		4.89	□□□□□ -1.63
SMD3	YLR147C	APL3	P38065	1025 aa		4.89	□□□□□ -1.63
SMD3	YLR147C	SPC98	P53540	846 aa		4.89	□□□□□ -1.63
SMD3	YLR147C	RPN13	O13563	156 aa		4.88	□□□□□ -1.63
SMD3	YLR147C	ILV6	P25605	309 aa	Known RBP	4.88	□□□□□ -1.63
SMD3	YLR147C	HXT4	P32467	576 aa		4.88	□□□□□ -1.63
SMD3	YLR147C	CUE2	P36075	443 aa	Known RBP	4.88	□□□□□ -1.63
SMD3	YLR147C	MUP3	P38734	546 aa		4.88	□□□□□ -1.63
SMD3	YLR147C	NIT2	P47016	307 aa		4.88	□□□□□ -1.63
SMD3	YLR147C	HLR1	Q04429	423 aa		4.88	□□□□□ -1.63
SMD3	YLR147C	UFO1	Q04511	668 aa		4.88	□□□□□ -1.63
SMD3	YLR147C	SPO11	P23179	398 aa		4.87	□□□□□ -1.63
SMD3	YLR147C	DGR2	P32330	852 aa		4.87	□□□□□ -1.63
SMD3	YLR147C	YHR033W	P38690	423 aa		4.87	□□□□□ -1.63
SMD3	YLR147C	TIM50	Q02776	476 aa		4.87	□□□□□ -1.63
SMD3	YLR147C	SKY1	Q03656	742 aa		4.87	□□□□□ -1.63
SMD3	YLR147C	NGL1	Q08213	363 aa	Known RBP	4.87	□□□□□ -1.63
SMD3	YLR147C	STE4	P18851	423 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	PAC2	P39937	518 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	PMT6	P42934	759 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	YDL183C	P48569	320 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	RNR4	P49723	345 aa	Known RBP	4.86	□□□□□ -1.63
SMD3	YLR147C	YGR054W	P53235	642 aa	Known RBP	4.86	□□□□□ -1.63
SMD3	YLR147C	YDR179W-A	Q03983	463 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	YPR027C	Q12079	277 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	NDJ1	Q12366	352 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	TMA17	Q12513	150 aa		4.86	□□□□□ -1.63
SMD3	YLR147C	STE12	P13574	688 aa		4.85	□□□□□ -1.63
SMD3	YLR147C	PEX2	P32800	271 aa		4.85	□□□□□ -1.63
SMD3	YLR147C	MRPL7	P36519	292 aa		4.85	□□□□□ -1.63
SMD3	YLR147C	YBR071W	P38243	211 aa		4.85	□□□□□ -1.63
SMD3	YLR147C	ENP2	P48234	707 aa	Known RBP	4.85	□□□□□ -1.63
SMD3	YLR147C	LGE1	Q02796	332 aa	Known RBP	4.85	□□□□□ -1.63
SMD3	YLR147C	YML122C	Q03207	126 aa		4.85	□□□□□ -1.63
SMD3	YLR147C	RMP1	Q12530	201 aa		4.85	□□□□□ -1.63
SMD3	YLR147C	HMG2	P12684	1045 aa		4.84	□□□□□ -1.63
SMD3	YLR147C	RMA1	P36001	430 aa	Known RBP	4.84	□□□□□ -1.63
SMD3	YLR147C	EHT1	P38295	451 aa		4.84	□□□□□ -1.63
SMD3	YLR147C	PPE1	P38796	400 aa		4.84	□□□□□ -1.63
SMD3	YLR147C	PMC1	P38929	1173 aa	Predicted RBP	4.84	□□□□□ -1.63
SMD3	YLR147C	YJR120W	P47157	116 aa		4.84	□□□□□ -1.63
SMD3	YLR147C	ASN1	P49089	572 aa	Known RBP	4.84	□□□□□ -1.63
SMD3	YLR147C	MRK1	P50873	501 aa		4.84	□□□□□ -1.63
SMD3	YLR147C	EFR3	Q03653	782 aa	Known RBP	4.84	□□□□□ -1.63
SMD3	YLR147C	YCG1	Q06680	1035 aa		4.84	□□□□□ -1.63
SMD3	YLR147C	AEP2	P22136	580 aa		4.83	□□□□□ -1.64
SMD3	YLR147C	TSR4	P25040	408 aa		4.83	□□□□□ -1.64
SMD3	YLR147C	ENP1	P38333	483 aa	Known RBP	4.83	□□□□□ -1.64
SMD3	YLR147C	IRC5	P43610	853 aa		4.83	□□□□□ -1.64
SMD3	YLR147C	IMO32	P53219	342 aa		4.83	□□□□□ -1.64
SMD3	YLR147C	DAK1	P54838	584 aa	Known RBP	4.83	□□□□□ -1.64
SMD3	YLR147C	NGL2	Q03264	515 aa	Known RBP	4.83	□□□□□ -1.64
SMD3	YLR147C	ARR3	Q06598	404 aa		4.83	□□□□□ -1.64
SMD3	YLR147C	MDM20	Q12387	796 aa	Known RBP	4.83	□□□□□ -1.64
SMD3	YLR147C	TPK2	P06245	380 aa		4.82	□□□□□ -1.64
SMD3	YLR147C	SAT4	P25333	603 aa	Known RBP	4.82	□□□□□ -1.64
SMD3	YLR147C	HEM12	P32347	362 aa	Predicted RBP	4.82	□□□□□ -1.64
SMD3	YLR147C	COG6	P53959	839 aa		4.82	□□□□□ -1.64
SMD3	YLR147C	TRE2	Q08693	809 aa		4.82	□□□□□ -1.64
SMD3	YLR147C	CNE1	P27825	502 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	YMC1	P32331	307 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	PAF1	P38351	445 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	SRP68	P38687	599 aa	Known RBP	4.81	□□□□□ -1.64
SMD3	YLR147C	LRO1	P40345	661 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	YIP4	P53093	235 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	YGL117W	P53133	265 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	CEF1	Q03654	590 aa	Predicted RBP	4.81	□□□□□ -1.64
SMD3	YLR147C	TRS23	Q03784	219 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	AIM41	Q12032	185 aa		4.81	□□□□□ -1.64
SMD3	YLR147C	YEL076C-A	P0CX16	216 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	YLR464W	P0CX17	216 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	COX11	P19516	300 aa	Known RBP	4.8	□□□□□ -1.64
SMD3	YLR147C	RPA135	P22138	1203 aa	Known RBP	4.8	□□□□□ -1.64
SMD3	YLR147C	UGP1	P32861	499 aa	Known RBP	4.8	□□□□□ -1.64
SMD3	YLR147C	YEL076C	P39971	216 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	THI6	P41835	540 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	SPC105	P53148	917 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	PEF1	P53238	335 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	CPR8	P53728	308 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	ARG7	Q04728	441 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	COQ11	Q05892	277 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	YOR378W	Q08902	515 aa		4.8	□□□□□ -1.64
SMD3	YLR147C	LEU2	P04173	364 aa	Predicted RBP	4.79	□□□□□ -1.64
SMD3	YLR147C	VPS34	P22543	875 aa		4.79	□□□□□ -1.64
SMD3	YLR147C	YEL025C	P39991	1188 aa		4.79	□□□□□ -1.64
SMD3	YLR147C	EAF5	P39995	279 aa		4.79	□□□□□ -1.64
SMD3	YLR147C	SLD3	P53135	668 aa		4.79	□□□□□ -1.64
SMD3	YLR147C	MFM1	Q02783	413 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 43.3 ms