RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	TSL1	P38427	1098 aa	Known RBP	4.04	□□□□□ -1.76
NUP85	YJR042W	STT3	P39007	718 aa	Known RBP	4.04	□□□□□ -1.76
NUP85	YJR042W	PCL7	P40186	285 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	BNI4	P53858	892 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	MRPL13	Q02204	264 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	APC5	Q08683	685 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	RPL11A	P0C0W9	174 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	TRX1	P22217	103 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	PDC6	P26263	563 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	HXT4	P32467	576 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	REC104	P33323	182 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	YKR051W	P36142	418 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	FUN12	P39730	1002 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	RTT105	P40063	208 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	SCS2	P40075	244 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	YIR014W	P40570	242 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	MAD2	P40958	196 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	FYV8	P46949	817 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	VTC4	P47075	721 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	ZIP2	P53061	704 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	YNR061C	P53747	219 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	YNR068C	P53754	272 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	YPL107W	Q02873	248 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	RPL11B	Q3E757	174 aa	Predicted RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	GLN4	P13188	809 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	HCA4	P20448	770 aa	Known RBP	4.03	□□□□□ -1.76
NUP85	YJR042W	SDH2	P21801	266 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	MNE1	P24720	663 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	YCL002C	P25565	263 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	ADK2	P26364	225 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	OPY1	P38271	328 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	SPO22	P40511	975 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	LCB2	P40970	561 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	FET5	P43561	622 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	SPO74	P45819	413 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	HNT2	P49775	206 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	YKE2	P52553	114 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	YNR065C	P53751	1116 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	VPS75	P53853	264 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	DIN7	Q12086	430 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	Q0142	Q9ZZW4	58 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	PSK1	P31374	1356 aa		4.03	□□□□□ -1.76
NUP85	YJR042W	LEU2	P04173	364 aa	Predicted RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	RPC40	P07703	335 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	FUS1	P11710	512 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.02	□□□□□ -1.77	not detected
NUP85	YJR042W	MCM3	P24279	971 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	SWI4	P25302	1093 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	SEC65	P29478	273 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	NGG1	P32494	702 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	PCH2	P38126	564 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	RFC1	P38630	861 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	YFL054C	P43549	646 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	ARH1	P48360	493 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	DSD1	P53095	428 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	MTD1	Q02046	320 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	YML119W	Q03208	357 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	LRS4	Q04087	347 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	YPR172W	Q06608	200 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	MCH5	Q08777	521 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	GRX6	Q12438	231 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	FRE6	Q12473	712 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	KCS1	Q12494	1050 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	YBR182C-A	Q8TGU6	64 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	KRE5	P22023	1365 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	YMR084W	A2P2R3	262 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	SUI3	P09064	285 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	DBP3	P20447	523 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	MDL1	P33310	695 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	CTF13	P35203	478 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	SIF2	P38262	535 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	RGD1	P38339	666 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	PSD1	P39006	500 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	SEC28	P40509	296 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	VMA13	P41807	478 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	YJR124C	P47159	448 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	NGL3	Q03210	505 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	TGL5	Q12043	749 aa		4.02	□□□□□ -1.77
NUP85	YJR042W	SPE3	Q12074	293 aa	Known RBP	4.02	□□□□□ -1.77
NUP85	YJR042W	YRF1-4	O13559	1382 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	MRP10	O75012	95 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	STE50	P25344	346 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	PUP2	P32379	260 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	FRD1	P32614	470 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	UIP5	P36137	443 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	RTS1	P38903	757 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	PIK1	P39104	1066 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	RTR1	P40084	226 aa	Predicted RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
NUP85	YJR042W	MRX6	P48564	524 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	FOL2	P51601	243 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	PPT1	P53043	513 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	NCE103	P53615	221 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	LEE1	Q02799	301 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	PEX25	Q02969	394 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	TAP42	Q04372	366 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	ECM22	Q05958	814 aa	Predicted RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	PHO92	Q06390	306 aa		4.01	□□□□□ -1.77
NUP85	YJR042W	NGL1	Q08213	363 aa	Known RBP	4.01	□□□□□ -1.77
NUP85	YJR042W	BMS1	Q08965	1183 aa	Known RBP	4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms