RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	CWC2	Q12046	339 aa	Predicted RBP	4.41	□□□□□ -1.7
UBX5	YDR330W	NUR1	Q12066	484 aa		4.41	□□□□□ -1.7
UBX5	YDR330W	UPC2	Q12151	913 aa		4.41	□□□□□ -1.7
UBX5	YDR330W	SWM1	Q12379	170 aa		4.41	□□□□□ -1.7
UBX5	YDR330W	RSF2	P46974	1380 aa		4.4	□□□□□ -1.7
UBX5	YDR330W	PHO3	P24031	467 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	IMG2	P25642	146 aa	Predicted RBP	4.4	□□□□□ -1.71
UBX5	YDR330W	PET309	P32522	965 aa	Predicted RBP	4.4	□□□□□ -1.71
UBX5	YDR330W	IME2	P32581	645 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	APT2	P36973	181 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	PFA3	P42836	336 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	PRP31	P49704	494 aa	Predicted RBP	4.4	□□□□□ -1.71
UBX5	YDR330W	SNO2	P53823	222 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	ASI2	P53895	289 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	MUS81	Q04149	632 aa	Predicted RBP	4.4	□□□□□ -1.71
UBX5	YDR330W	CSI1	Q04368	295 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	SGD1	Q06132	899 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	NGL1	Q08213	363 aa	Known RBP	4.4	□□□□□ -1.71
UBX5	YDR330W	MED7	Q08278	222 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	PSF3	Q12146	194 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	LYS2	P07702	1392 aa		4.4	□□□□□ -1.71
UBX5	YDR330W	HIS5	P07172	385 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	RPS19A	P07280	144 aa	Known RBP	4.39	□□□□□ -1.71
UBX5	YDR330W	RPS19B	P07281	144 aa	Predicted RBP	4.39	□□□□□ -1.71
UBX5	YDR330W	APA1	P16550	321 aa	Known RBP	4.39	□□□□□ -1.71
UBX5	YDR330W	MSH1	P25846	959 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	HXT4	P32467	576 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	EXO84	P38261	753 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	ERP2	P39704	215 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	STL1	P39932	569 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	VHR1	P40522	640 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	EXG2	P52911	562 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	TEP1	P53916	434 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	LEE1	Q02799	301 aa	Known RBP	4.39	□□□□□ -1.71
UBX5	YDR330W	SVL3	Q03088	825 aa	Known RBP	4.39	□□□□□ -1.71
UBX5	YDR330W	ISA1	Q07821	250 aa	Predicted RBP	4.39	□□□□□ -1.71
UBX5	YDR330W	PUS1	Q12211	544 aa	Known RBP	4.39	□□□□□ -1.71
UBX5	YDR330W	GPR1	Q12361	961 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	KCS1	Q12494	1050 aa		4.39	□□□□□ -1.71
UBX5	YDR330W	TRP3	P00937	484 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	CDC26	P14724	124 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.38	□□□□□ -1.71	not detected
UBX5	YDR330W	YNG2	P38806	282 aa	Known RBP	4.38	□□□□□ -1.71
UBX5	YDR330W	VID27	P40157	782 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	IES1	P43579	692 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	TAF1	P46677	1066 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	IML2	P47031	731 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	CEG1	Q01159	459 aa	Predicted RBP	4.38	□□□□□ -1.71
UBX5	YDR330W	MTD1	Q02046	320 aa	Known RBP	4.38	□□□□□ -1.71
UBX5	YDR330W	REC102	Q02721	264 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	ROT1	Q03691	256 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	ASM4	Q05166	528 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	VHS3	Q08438	674 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	ARP7	Q12406	477 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	ENT1	Q12518	454 aa		4.38	□□□□□ -1.71
UBX5	YDR330W	PYC1	P11154	1178 aa	Known RBP	4.37	□□□□□ -1.71
UBX5	YDR330W	MSM1	P22438	575 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	MF(ALPHA)2	P32435	120 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	STE14	P32584	239 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	PET127	P32606	800 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	LRG1	P35688	1017 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	TOS1	P38288	455 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	YBR259W	P38338	688 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	LAM1	P38851	1228 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	EAF5	P39995	279 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	GID8	P40208	455 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	IRC5	P43610	853 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	GCV2	P49095	1034 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	SPO1	P53541	631 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	YML131W	Q03102	365 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	HLR1	Q04429	423 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	MCM21	Q06675	368 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	BRE1	Q07457	700 aa	Known RBP	4.37	□□□□□ -1.71
UBX5	YDR330W	GPB1	Q08886	897 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	HMI1	Q12039	706 aa		4.37	□□□□□ -1.71
UBX5	YDR330W	YLR415C	O13578	112 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	YEL076C-A	P0CX16	216 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	YLR464W	P0CX17	216 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	SEC18	P18759	758 aa	Known RBP	4.36	□□□□□ -1.71
UBX5	YDR330W	OSM1	P21375	501 aa	Known RBP	4.36	□□□□□ -1.71
UBX5	YDR330W	RAD24	P32641	659 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	APL2	P36000	726 aa	Predicted RBP	4.36	□□□□□ -1.71
UBX5	YDR330W	SIC1	P38634	284 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	ECM1	P39715	212 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	SSP120	P39931	234 aa	Known RBP	4.36	□□□□□ -1.71
UBX5	YDR330W	YEL076C	P39971	216 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	NCS6	P53088	359 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	ARG5,6	Q01217	863 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	PLB2	Q03674	706 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	NSE5	Q03718	556 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	PPN1	Q04119	674 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	BLS1	Q06071	122 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	COG4	Q06096	861 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	YPS7	Q06325	596 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	RXT3	Q07458	294 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	NOP12	Q08208	459 aa	Known RBP	4.36	□□□□□ -1.71
UBX5	YDR330W	SGO1	Q08490	590 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	MRP7	P12687	371 aa		4.36	□□□□□ -1.71
UBX5	YDR330W	ADE2	P21264	571 aa	Known RBP	4.36	□□□□□ -1.71
UBX5	YDR330W	EMC1	P25574	760 aa		4.36	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 21.4 ms