RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W YJR039WP47107 1121 aa14.7□□□□□ -0.06
DEP1YAL013W TAO3P40468 2376 aa14.7□□□□□ -0.06
DEP1YAL013W PLC1P32383 869 aa14.69□□□□□ -0.06
DEP1YAL013W MET4P32389 672 aa14.69□□□□□ -0.06
DEP1YAL013W VPH1P32563 840 aaKnown RBP14.69□□□□□ -0.06
DEP1YAL013W VHC1P38329 1120 aa14.69□□□□□ -0.06
DEP1YAL013W AVT2P39981 480 aa14.69□□□□□ -0.06
DEP1YAL013W YGR283CP53336 341 aaPredicted RBP14.69□□□□□ -0.06
DEP1YAL013W ADA2Q02336 434 aa14.69□□□□□ -0.06
DEP1YAL013W TAF10Q12030 206 aa14.69□□□□□ -0.06
DEP1YAL013W ATP1P07251 545 aaKnown RBP14.68□□□□□ -0.06
DEP1YAL013W MEI4P29467 408 aa14.68□□□□□ -0.06
DEP1YAL013W YBR053CP38235 358 aa14.68□□□□□ -0.06
DEP1YAL013W HSL7P38274 827 aa14.68□□□□□ -0.06
DEP1YAL013W NMD3P38861 518 aaKnown RBP14.68□□□□□ -0.06
DEP1YAL013W FHL1P39521 936 aa14.68□□□□□ -0.06
DEP1YAL013W NUT1P53114 1132 aa14.68□□□□□ -0.06
DEP1YAL013W FMP25Q08023 583 aa14.68□□□□□ -0.06
DEP1YAL013W ACM1Q08981 209 aa14.68□□□□□ -0.06
DEP1YAL013W NBP2Q12163 236 aa14.68□□□□□ -0.06
DEP1YAL013W YCR015CP25616 317 aa14.67□□□□□ -0.06
DEP1YAL013W CIN4P39110 191 aa14.67□□□□□ -0.06
DEP1YAL013W FLC2P39719 783 aa14.67□□□□□ -0.06
DEP1YAL013W TGL3P40308 642 aa14.67□□□□□ -0.06
DEP1YAL013W HLJ1P48353 224 aa14.67□□□□□ -0.06
DEP1YAL013W PRM6Q04705 352 aa14.67□□□□□ -0.06
DEP1YAL013W THI20Q08224 551 aa14.67□□□□□ -0.06
DEP1YAL013W MRN1Q08925 612 aaKnown RBP RIP-Chip data14.67□□□□□ -0.06not detected
DEP1YAL013W DDC1Q08949 612 aa14.67□□□□□ -0.06
DEP1YAL013W GCR1P07261 785 aa14.66□□□□□ -0.06
DEP1YAL013W SLY1P22213 666 aa14.66□□□□□ -0.06
DEP1YAL013W GPI10P30777 616 aa14.66□□□□□ -0.06
DEP1YAL013W ECM32P32644 1121 aaKnown RBP14.66□□□□□ -0.06
DEP1YAL013W GCS1P35197 352 aa14.66□□□□□ -0.06
DEP1YAL013W MKT1P40850 830 aaKnown RBP14.66□□□□□ -0.06
DEP1YAL013W PNG1Q02890 363 aa14.66□□□□□ -0.06
DEP1YAL013W MRI1Q06489 411 aaKnown RBP14.66□□□□□ -0.06
DEP1YAL013W THI21Q08975 551 aa14.66□□□□□ -0.06
DEP1YAL013W PYC1P11154 1178 aaKnown RBP14.65□□□□□ -0.06
DEP1YAL013W SIF2P38262 535 aa14.65□□□□□ -0.06
DEP1YAL013W JHD1P40034 492 aa14.65□□□□□ -0.06
DEP1YAL013W CDC1P40986 491 aa14.65□□□□□ -0.06
DEP1YAL013W TAF1P46677 1066 aa14.65□□□□□ -0.06
DEP1YAL013W ALY2P47029 1046 aa14.65□□□□□ -0.06
DEP1YAL013W AIM32Q04689 311 aa14.65□□□□□ -0.06
DEP1YAL013W FAP7Q12055 197 aaPredicted RBP14.65□□□□□ -0.06
DEP1YAL013W AVL9Q12500 764 aa14.65□□□□□ -0.06
DEP1YAL013W IZH4Q99393 312 aa14.65□□□□□ -0.06
DEP1YAL013W CBF1P17106 351 aa14.64□□□□□ -0.07
DEP1YAL013W POP4P38336 279 aa14.64□□□□□ -0.07
DEP1YAL013W SAW1P39735 261 aa14.64□□□□□ -0.07
DEP1YAL013W INA22P40576 216 aa14.64□□□□□ -0.07
DEP1YAL013W SAP185P40856 1058 aa14.64□□□□□ -0.07
DEP1YAL013W GUF1P46943 645 aa14.64□□□□□ -0.07
DEP1YAL013W PEX31P53203 462 aa14.64□□□□□ -0.07
DEP1YAL013W YML083CQ04526 418 aa14.64□□□□□ -0.07
DEP1YAL013W HRD3Q05787 833 aa14.64□□□□□ -0.07
DEP1YAL013W STE23Q06010 1027 aa14.64□□□□□ -0.07
DEP1YAL013W LEA1Q08963 238 aaPredicted RBP14.64□□□□□ -0.07
DEP1YAL013W HRT3Q12347 344 aa14.64□□□□□ -0.07
DEP1YAL013W ADH4P10127 382 aa14.63□□□□□ -0.07
DEP1YAL013W PEX2P32800 271 aa14.63□□□□□ -0.07
DEP1YAL013W RSC8P43609 557 aaKnown RBP14.63□□□□□ -0.07
DEP1YAL013W CTK3P46963 296 aaPredicted RBP14.63□□□□□ -0.07
DEP1YAL013W RSM26P47141 266 aa14.63□□□□□ -0.07
DEP1YAL013W EMI2Q04409 500 aaKnown RBP14.63□□□□□ -0.07
DEP1YAL013W HIP1P06775 603 aa14.62□□□□□ -0.07
DEP1YAL013W RAD1P06777 1100 aa14.62□□□□□ -0.07
DEP1YAL013W SPO16P17122 198 aa14.62□□□□□ -0.07
DEP1YAL013W KGD2P19262 463 aaPredicted RBP14.62□□□□□ -0.07
DEP1YAL013W RGR1P19263 1082 aa14.62□□□□□ -0.07
DEP1YAL013W DSS4P32601 143 aa14.62□□□□□ -0.07
DEP1YAL013W YME1P32795 747 aa14.62□□□□□ -0.07
DEP1YAL013W YBR056WP38081 501 aa14.62□□□□□ -0.07
DEP1YAL013W DUG2P38149 878 aa14.62□□□□□ -0.07
DEP1YAL013W RGD2P43556 714 aa14.62□□□□□ -0.07
DEP1YAL013W RKM2Q03942 479 aa14.62□□□□□ -0.07
DEP1YAL013W SFH1Q06168 426 aa14.62□□□□□ -0.07
DEP1YAL013W PRC1P00729 532 aa14.61□□□□□ -0.07
DEP1YAL013W HEM15P16622 393 aa14.61□□□□□ -0.07
DEP1YAL013W HXT3P32466 567 aaKnown RBP14.61□□□□□ -0.07
DEP1YAL013W RIM4P38741 713 aa14.61□□□□□ -0.07
DEP1YAL013W SMX2P40204 77 aaKnown RBP14.61□□□□□ -0.07
DEP1YAL013W ATG36P46983 293 aa14.61□□□□□ -0.07
DEP1YAL013W CEG1Q01159 459 aaPredicted RBP14.61□□□□□ -0.07
DEP1YAL013W SND1Q04007 877 aa14.61□□□□□ -0.07
DEP1YAL013W PNP1Q05788 311 aa14.61□□□□□ -0.07
DEP1YAL013W YDL073WQ07454 984 aa14.61□□□□□ -0.07
DEP1YAL013W RRD2Q12461 358 aa14.61□□□□□ -0.07
DEP1YAL013W CDC24P11433 854 aaPredicted RBP14.6□□□□□ -0.07
DEP1YAL013W TPS2P31688 896 aaKnown RBP14.6□□□□□ -0.07
DEP1YAL013W VPS25P47142 202 aa14.6□□□□□ -0.07
DEP1YAL013W RFX1P48743 811 aa14.6□□□□□ -0.07
DEP1YAL013W MET13P53128 600 aa14.6□□□□□ -0.07
DEP1YAL013W KTR6P54070 446 aa14.6□□□□□ -0.07
DEP1YAL013W CDC73Q06697 393 aa14.6□□□□□ -0.07
DEP1YAL013W TPO1Q07824 586 aa14.6□□□□□ -0.07
DEP1YAL013W FRA1Q07825 749 aa14.6□□□□□ -0.07
DEP1YAL013W LCB4Q12246 624 aa14.6□□□□□ -0.07
DEP1YAL013W CCP1P00431 361 aa14.59□□□□□ -0.07
Retrieved 100 of 5,963 RNA–protein pairs in 123.1 ms