RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RNFT1Q5M7Z0 435 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 FAM53AQ6NSI3 398 aaPredicted RBP16.19■□□□□ 0.18
VPS28-213ENST00000530983 BEND4Q6ZU67 534 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 RPP25LQ8N5L8 163 aaKnown RBP16.19■□□□□ 0.18
VPS28-213ENST00000530983 ZNF645Q8N7E2 425 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 C5orf30Q96GV9 206 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 PACRGQ96M98 296 aaPredicted RBP16.19■□□□□ 0.18
VPS28-213ENST00000530983 SSX3Q99909 188 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 ARRDC1-AS1Q9H2J1 176 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 RNF212BA8MTL3 300 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 CLDN1O95832 211 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 OR1L1Q8NH94 360 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 HIST1H2BLQ99880 126 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 HSPB7Q9UBY9 170 aa16.19■□□□□ 0.18
VPS28-213ENST00000530983 LNP1A1A4G5 178 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 PHOX2AO14813 284 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 HAND1O96004 215 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 GRPP07492 148 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 P0C879 139 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 PAX1P15863 534 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 IL2RGP31785 369 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 IDH3GP51553 393 aaPredicted RBP16.18■□□□□ 0.18
VPS28-213ENST00000530983 WDR25Q64LD2 544 aaPredicted RBP16.18■□□□□ 0.18
VPS28-213ENST00000530983 DEFB123Q8N688 67 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 SLC25A40Q8TBP6 338 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 ZNF737O75373 536 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 G6PCP35575 357 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 RPL30P62888 115 aaKnown RBP16.18■□□□□ 0.18
VPS28-213ENST00000530983 HNF4GQ14541 408 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 OR2D2Q9H210 308 aa16.18■□□□□ 0.18
VPS28-213ENST00000530983 C12orf77C9JDV5 145 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 KRASP01116 189 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 IFNA1P01562 189 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 OR3A1P47881 315 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 PSG7Q13046 419 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 MRPL49Q13405 166 aaKnown RBP16.17■□□□□ 0.18
VPS28-213ENST00000530983 EIF4EBP1Q13541 118 aaPredicted RBP16.17■□□□□ 0.18
VPS28-213ENST00000530983 PMS2P11Q13670 270 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 LHX4Q969G2 390 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 MISP3Q96FF7 219 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 CDH20Q9HBT6 801 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 HES4Q9HCC6 221 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 TIMM9Q9Y5J7 89 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 GPR179Q6PRD1 2367 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 DOCK11Q5JSL3 2073 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 TRGV5A0A0B4J1U4 118 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 IQCF6A8MYZ5 107 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 CD55P08174 381 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 RAC2P15153 192 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 HOXA4Q00056 320 aaPredicted RBP16.17■□□□□ 0.18
VPS28-213ENST00000530983 ACSM6Q6P461 480 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 CENPVQ7Z7K6 275 aaPredicted RBP16.17■□□□□ 0.18
VPS28-213ENST00000530983 SLC39A9Q9NUM3 307 aa16.17■□□□□ 0.18
VPS28-213ENST00000530983 PRRC2CQ9Y520 2896 aaKnown RBP16.16■□□□□ 0.18
VPS28-213ENST00000530983 URB1O60287 2271 aaKnown RBP16.16■□□□□ 0.18
VPS28-213ENST00000530983 IGHV1-2P23083 117 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 BRWD1-AS2P59051 145 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 ZNF816Q0VGE8 651 aaPredicted RBP16.16■□□□□ 0.18
VPS28-213ENST00000530983 GALMQ96C23 342 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 SNX22Q96L94 193 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 KCNIP1Q9NZI2 227 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 TRBV24-1A0A075B6N3 115 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 TMEM30CPA0ZSE6 113 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 ODAMA1E959 279 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 C1QTNF9BB2RNN3 333 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 CD46P15529 392 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 GABRA6Q16445 453 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 FIP1L1Q6UN15 594 aaKnown RBP16.16■□□□□ 0.18
VPS28-213ENST00000530983 ZNF808Q8N4W9 903 aaPredicted RBP16.16■□□□□ 0.18
VPS28-213ENST00000530983 ZBTB34Q8NCN2 500 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 OR52L2PQ8NGH6 319 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 OR5R1Q8NH85 324 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 C2orf88Q9BSF0 95 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 CLN8Q9UBY8 286 aa16.16■□□□□ 0.18
VPS28-213ENST00000530983 CACNA1DQ01668 2161 aa16.15■□□□□ 0.18
VPS28-213ENST00000530983 SMCO3A2RU48 225 aa16.15■□□□□ 0.18
VPS28-213ENST00000530983 LRRC30A6NM36 301 aa16.15■□□□□ 0.18
VPS28-213ENST00000530983 WNT9BO14905 357 aa16.15■□□□□ 0.18
VPS28-213ENST00000530983 S1PR2O95136 353 aa16.15■□□□□ 0.18
VPS28-213ENST00000530983 MEF2BQ02080 365 aaPredicted RBP16.15■□□□□ 0.18
VPS28-213ENST00000530983 OPN1MWP04001 364 aa16.14■□□□□ 0.18
VPS28-213ENST00000530983 OPN1MW2P0DN77 364 aa16.14■□□□□ 0.18
VPS28-213ENST00000530983 OPN1MW3P0DN78 364 aa16.14■□□□□ 0.18
VPS28-213ENST00000530983 MPV17P39210 176 aa16.14■□□□□ 0.18
VPS28-213ENST00000530983 UBE2NP61088 152 aaKnown RBP16.14■□□□□ 0.18
VPS28-213ENST00000530983 SSX2Q16385 188 aa16.14■□□□□ 0.18
VPS28-213ENST00000530983 ATP1A1-AS1Q5TC04 95 aa16.14■□□□□ 0.18
VPS28-213ENST00000530983 CXorf67Q86X51 503 aaPredicted RBP16.14■□□□□ 0.18
VPS28-213ENST00000530983 AGMATQ9BSE5 352 aa16.14■□□□□ 0.18
VPS28-213ENST00000530983 TMEM210A6NLX4 147 aa16.14■□□□□ 0.17
VPS28-213ENST00000530983 PMS2P5A8MQ11 134 aa16.14■□□□□ 0.17
VPS28-213ENST00000530983 MKRN2OSH3BPM6 223 aa16.14■□□□□ 0.17
VPS28-213ENST00000530983 HMGB3O15347 200 aaKnown RBP16.14■□□□□ 0.17
VPS28-213ENST00000530983 LYZL6O75951 148 aa16.14■□□□□ 0.17
VPS28-213ENST00000530983 MDKP21741 143 aaPredicted RBP16.14■□□□□ 0.17
VPS28-213ENST00000530983 AESQ08117 197 aa16.14■□□□□ 0.17
VPS28-213ENST00000530983 MSMO1Q15800 293 aa16.14■□□□□ 0.17
VPS28-213ENST00000530983 ZNF826PQ6ZT77 177 aa16.14■□□□□ 0.17
VPS28-213ENST00000530983 GMPPAQ96IJ6 420 aaPredicted RBP16.14■□□□□ 0.17
VPS28-213ENST00000530983 FER1L6-AS2Q96M78 137 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms