RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	6.58	□□□□□ -1.36	not detected
TFB4	YPR056W	RNA1	P11745	407 aa	Known RBP	6.58	□□□□□ -1.36
TFB4	YPR056W	MSD1	P15179	658 aa	Known RBP	6.58	□□□□□ -1.36
TFB4	YPR056W	VMA2	P16140	517 aa	Known RBP	6.58	□□□□□ -1.36
TFB4	YPR056W	APN1	P22936	367 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	BYE1	P36106	594 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	VPS41	P38959	992 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	TIF4631	P39935	952 aa	Known RBP	6.58	□□□□□ -1.36
TFB4	YPR056W	YEL068C	P39977	110 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	VHR1	P40522	640 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	ALG2	P43636	503 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	HFM1	P51979	1187 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	ZIP2	P53061	704 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	YMR111C	Q04461	462 aa	Predicted RBP	6.58	□□□□□ -1.36
TFB4	YPR056W	SWA2	Q06677	668 aa		6.58	□□□□□ -1.36
TFB4	YPR056W	RPC40	P07703	335 aa	Known RBP	6.57	□□□□□ -1.36
TFB4	YPR056W	NPL6	P32832	435 aa		6.57	□□□□□ -1.36
TFB4	YPR056W	KAP123	P40069	1113 aa	Known RBP	6.57	□□□□□ -1.36
TFB4	YPR056W	RAD33	Q04231	177 aa		6.57	□□□□□ -1.36
TFB4	YPR056W	RNH1	Q04740	348 aa		6.57	□□□□□ -1.36
TFB4	YPR056W	RPP2A	P05319	106 aa	Known RBP	6.56	□□□□□ -1.36
TFB4	YPR056W	PDX1	P16451	410 aa		6.56	□□□□□ -1.36
TFB4	YPR056W	MSH1	P25846	959 aa		6.56	□□□□□ -1.36
TFB4	YPR056W	SLC1	P33333	303 aa		6.56	□□□□□ -1.36
TFB4	YPR056W	MTH1	P35198	433 aa		6.56	□□□□□ -1.36
TFB4	YPR056W	PCM1	P38628	557 aa	Known RBP	6.56	□□□□□ -1.36
TFB4	YPR056W	YGR153W	P48238	217 aa		6.56	□□□□□ -1.36
TFB4	YPR056W	CNM67	P53865	581 aa	Known RBP	6.56	□□□□□ -1.36
TFB4	YPR056W	ECM38	Q05902	660 aa	Predicted RBP	6.56	□□□□□ -1.36
TFB4	YPR056W	YLH47	Q06493	454 aa		6.56	□□□□□ -1.36
TFB4	YPR056W	NOP12	Q08208	459 aa	Known RBP	6.56	□□□□□ -1.36
TFB4	YPR056W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	6.56	□□□□□ -1.36	not detected
TFB4	YPR056W	HMI1	Q12039	706 aa		6.56	□□□□□ -1.36
TFB4	YPR056W	ILS1	P09436	1072 aa	Known RBP	6.55	□□□□□ -1.36
TFB4	YPR056W	YKU70	P32807	602 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	DID4	P36108	232 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	PET10	P36139	283 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	RTT105	P40063	208 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	MND2	P40577	368 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	MNN10	P50108	393 aa	Known RBP	6.55	□□□□□ -1.36
TFB4	YPR056W	ZDS2	P54786	942 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	CEG1	Q01159	459 aa	Predicted RBP	6.55	□□□□□ -1.36
TFB4	YPR056W	PRP42	Q03776	544 aa	Known RBP	6.55	□□□□□ -1.36
TFB4	YPR056W	UTP21	Q06078	939 aa	Predicted RBP	6.55	□□□□□ -1.36
TFB4	YPR056W	YCG1	Q06680	1035 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	YPR027C	Q12079	277 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	REX3	Q12090	404 aa		6.55	□□□□□ -1.36
TFB4	YPR056W	REC107	P21651	314 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	RIB7	P33312	244 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	CNS1	P33313	385 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	LST4	P34239	828 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	YKL151C	P36059	337 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	PCL7	P40186	285 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	RIC1	P40395	1056 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	DPH1	P40487	425 aa	Known RBP	6.54	□□□□□ -1.36
TFB4	YPR056W	MOT3	P54785	490 aa	Known RBP	6.54	□□□□□ -1.36
TFB4	YPR056W	SEC5	P89102	971 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	SKY1	Q03656	742 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	COG8	Q04632	607 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	YSH1	Q06224	779 aa	Predicted RBP	6.54	□□□□□ -1.36
TFB4	YPR056W	CUE5	Q08412	411 aa	Known RBP	6.54	□□□□□ -1.36
TFB4	YPR056W	OSW2	Q12202	724 aa		6.54	□□□□□ -1.36
TFB4	YPR056W	ENA1	P13587	1091 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	PMS1	P14242	873 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	POL4	P25615	582 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	MCD4	P36051	919 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	SMK1	P41808	388 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	MDE1	P47095	244 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	KEL2	P50090	882 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	AIM14	P53109	570 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	YGR250C	P53316	781 aa	Known RBP	6.53	□□□□□ -1.36
TFB4	YPR056W	HST1	P53685	503 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	TEP1	P53916	434 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	ENA2	Q01896	1091 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	HRQ1	Q05549	1077 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	YLR224W	Q05947	369 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	YDR306C	Q06640	478 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	YDL073W	Q07454	984 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	YPR071W	Q12346	211 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	RRP36	Q12481	300 aa	Predicted RBP	6.53	□□□□□ -1.36
TFB4	YPR056W	ENA5	Q12691	1091 aa		6.53	□□□□□ -1.36
TFB4	YPR056W	SEM1	O94742	89 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	EMC1	P25574	760 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	XRS2	P33301	854 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	FTH1	P38310	465 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	SPC72	P39723	622 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	ZRG8	P40021	1076 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	LSM5	P40089	93 aa	Known RBP	6.52	□□□□□ -1.37
TFB4	YPR056W	MET12	P46151	657 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	FYV8	P46949	817 aa	Known RBP	6.52	□□□□□ -1.37
TFB4	YPR056W	SHE10	P53075	577 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	GTF1	P53260	183 aa	Predicted RBP	6.52	□□□□□ -1.37
TFB4	YPR056W	ECM9	Q02202	377 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	VTC3	Q02725	835 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	HOT1	Q03213	719 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	TPO1	Q07824	586 aa		6.52	□□□□□ -1.37
TFB4	YPR056W	TUB2	P02557	457 aa	Known RBP	6.51	□□□□□ -1.37
TFB4	YPR056W	HMG1	P12683	1054 aa		6.51	□□□□□ -1.37
TFB4	YPR056W	AAR2	P32357	355 aa	Predicted RBP	6.51	□□□□□ -1.37
TFB4	YPR056W	RPN2	P32565	945 aa	Known RBP	6.51	□□□□□ -1.37

Retrieved 100 of 5,963 RNA–protein pairs in 47 ms