RNA–Protein interactions for RNA: YPL045W

VPS16, Transcript of Subunit of the HOPS and the CORVET complexes, yeast

Gene VPS16, Length 2,397 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS16	YPL045W	ORC4	P54791	529 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	SPC19	Q03954	165 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	SIZ1	Q04195	904 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	DBP10	Q12389	995 aa	Known RBP	2.61	□□□□□ -1.99
VPS16	YPL045W	DPH6	Q12429	685 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	AI3	P03877	415 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	MRP7	P12687	371 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	KIN2	P13186	1147 aa	Known RBP	2.61	□□□□□ -1.99
VPS16	YPL045W	MET8	P15807	274 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	CLB4	P24871	460 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	TOA1	P32773	286 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	TFC3	P34111	1160 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	NUP120	P35729	1037 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	SSP120	P39931	234 aa	Known RBP	2.61	□□□□□ -1.99
VPS16	YPL045W	PSF2	P40359	213 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	ENP2	P48234	707 aa	Known RBP	2.61	□□□□□ -1.99
VPS16	YPL045W	MTR3	P48240	250 aa	Predicted RBP	2.61	□□□□□ -1.99
VPS16	YPL045W	YAP1802	P53309	568 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	ARA2	Q04212	335 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	TDA9	Q04545	1251 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	IWR1	Q07532	353 aa	Predicted RBP	2.61	□□□□□ -1.99
VPS16	YPL045W	ISA1	Q07821	250 aa	Predicted RBP	2.61	□□□□□ -1.99
VPS16	YPL045W	TRE1	Q08919	783 aa		2.61	□□□□□ -1.99
VPS16	YPL045W	MIS1	P09440	975 aa	Known RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	HOM3	P10869	527 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	SIR1	P21691	654 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	OPI1	P21957	404 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	SET3	P36124	751 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	APN2	P38207	520 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	YHR078W	P38799	552 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	CTF8	P38877	133 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	SAK1	P38990	1142 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	ZRG8	P40021	1076 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	GID8	P40208	455 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	RIC1	P40395	1056 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	EXG2	P52911	562 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	RBG2	P53295	368 aa	Known RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	CBK1	P53894	756 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	RCM1	P53972	490 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	TAF11	Q04226	346 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	GRC3	Q07845	632 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	VHS3	Q08438	674 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	CBF2	P32504	956 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	RPT3	P33298	428 aa	Known RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	LRG1	P35688	1017 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	DHR2	P36009	735 aa	Predicted RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	YBR138C	P38277	524 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	UBS1	P38290	277 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	YLF2	P38746	405 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	AKR1	P39010	764 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	SDP1	P40479	209 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	CCT8	P47079	568 aa	Known RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	CTF18	P49956	741 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	RSC1	P53236	928 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	RSM24	Q03976	319 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	MUS81	Q04149	632 aa	Predicted RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	GSF2	Q04697	403 aa	Known RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	TRI1	Q05024	226 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	CSR1	Q06705	408 aa	Known RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	WHI4	Q07655	649 aa	Known RBP	2.6	□□□□□ -1.99
VPS16	YPL045W	VPS5	Q92331	675 aa		2.6	□□□□□ -1.99
VPS16	YPL045W	CDC16	P09798	840 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	FRS1	P15624	595 aa	Known RBP	2.59	□□□□□ -1.99
VPS16	YPL045W	SWI4	P25302	1093 aa	Known RBP	2.59	□□□□□ -1.99
VPS16	YPL045W	CMK1	P27466	446 aa	Known RBP	2.59	□□□□□ -1.99
VPS16	YPL045W	SWI3	P32591	825 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	PET127	P32606	800 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	PTC7	P38797	343 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	PZF1	P39933	429 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	GTS1	P40956	396 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	BUD8	P41698	603 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	PFA3	P42836	336 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	TAF4	P50105	388 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	PSP2	P50109	593 aa	Known RBP	2.59	□□□□□ -1.99
VPS16	YPL045W	SAP4	P53036	818 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	ARI1	P53111	347 aa	Known RBP	2.59	□□□□□ -1.99
VPS16	YPL045W	PEF1	P53238	335 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	YNR014W	P53719	212 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	HPF1	Q05164	967 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	TAH18	Q12181	623 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	SCM3	Q12334	223 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	ATG11	Q12527	1178 aa		2.59	□□□□□ -1.99
VPS16	YPL045W	SEM1	O94742	89 aa		2.59	□□□□□ -2
VPS16	YPL045W	ADE3	P07245	946 aa	Known RBP	2.59	□□□□□ -2
VPS16	YPL045W	FUM1	P08417	488 aa	Known RBP	2.59	□□□□□ -2
VPS16	YPL045W	SPE1	P08432	466 aa		2.59	□□□□□ -2
VPS16	YPL045W	SPO16	P17122	198 aa		2.59	□□□□□ -2
VPS16	YPL045W	BET2	P20133	325 aa		2.59	□□□□□ -2
VPS16	YPL045W	CWH43	P25618	953 aa		2.59	□□□□□ -2
VPS16	YPL045W	FRD1	P32614	470 aa	Known RBP	2.59	□□□□□ -2
VPS16	YPL045W	ATG19	P35193	415 aa		2.59	□□□□□ -2
VPS16	YPL045W	YHR033W	P38690	423 aa		2.59	□□□□□ -2
VPS16	YPL045W	NPR3	P38742	1146 aa		2.59	□□□□□ -2
VPS16	YPL045W	IRC6	P43615	237 aa		2.59	□□□□□ -2
VPS16	YPL045W	MRPL19	P53875	158 aa		2.59	□□□□□ -2
VPS16	YPL045W	TIM10	P87108	93 aa		2.59	□□□□□ -2
VPS16	YPL045W	YPL062W	Q02781	134 aa		2.59	□□□□□ -2
VPS16	YPL045W	NSE5	Q03718	556 aa		2.59	□□□□□ -2
VPS16	YPL045W	YKU80	Q04437	629 aa		2.59	□□□□□ -2
VPS16	YPL045W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	2.59	□□□□□ -2	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 33.7 ms