RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C RPS3P05750 240 aaKnown RBP5.15□□□□□ -1.59
NUP116YMR047C LCB2P40970 561 aa5.15□□□□□ -1.59
NUP116YMR047C GCD10P41814 478 aa5.15□□□□□ -1.59
NUP116YMR047C LSB3P43603 459 aaKnown RBP5.15□□□□□ -1.59
NUP116YMR047C ULI1P43604 169 aa5.15□□□□□ -1.59
NUP116YMR047C AVT1P47082 602 aa5.15□□□□□ -1.59
NUP116YMR047C RSM26P47141 266 aa5.15□□□□□ -1.59
NUP116YMR047C MRX6P48564 524 aa5.15□□□□□ -1.59
NUP116YMR047C GPI8P49018 411 aa5.15□□□□□ -1.59
NUP116YMR047C NBP1P52919 319 aaPredicted RBP5.15□□□□□ -1.59
NUP116YMR047C ESC2Q06340 456 aa5.15□□□□□ -1.59
NUP116YMR047C ARV1Q06541 321 aa5.15□□□□□ -1.59
NUP116YMR047C HMG1P12683 1054 aa5.15□□□□□ -1.59
NUP116YMR047C MRE11P32829 692 aa5.15□□□□□ -1.59
NUP116YMR047C COY1P34237 679 aa5.15□□□□□ -1.59
NUP116YMR047C CDC27P38042 758 aa5.15□□□□□ -1.59
NUP116YMR047C CCC2P38995 1004 aa5.15□□□□□ -1.59
NUP116YMR047C ORC5P50874 479 aa5.15□□□□□ -1.59
NUP116YMR047C SLG1P54867 378 aa5.15□□□□□ -1.59
NUP116YMR047C ENT2Q05785 613 aa5.15□□□□□ -1.59
NUP116YMR047C SGO1Q08490 590 aa5.15□□□□□ -1.59
NUP116YMR047C MPD2Q99316 277 aa5.15□□□□□ -1.59
NUP116YMR047C DSF1P0CX08 502 aa5.14□□□□□ -1.59
NUP116YMR047C YNR073CP0CX09 502 aa5.14□□□□□ -1.59
NUP116YMR047C SHE3P38272 425 aaKnown RBP5.14□□□□□ -1.59
NUP116YMR047C REI1P38344 393 aaPredicted RBP5.14□□□□□ -1.59
NUP116YMR047C SIP5P40210 489 aaKnown RBP5.14□□□□□ -1.59
NUP116YMR047C MON1P53129 644 aa5.14□□□□□ -1.59
NUP116YMR047C NOP15P53927 220 aaPredicted RBP5.14□□□□□ -1.59
NUP116YMR047C YPL014WQ02606 381 aa5.14□□□□□ -1.59
NUP116YMR047C EEB1Q02891 456 aa5.14□□□□□ -1.59
NUP116YMR047C EIS1Q05050 843 aaKnown RBP5.14□□□□□ -1.59
NUP116YMR047C PRC1P00729 532 aa5.14□□□□□ -1.59
NUP116YMR047C SNF1P06782 633 aaKnown RBP5.14□□□□□ -1.59
NUP116YMR047C FUS1P11710 512 aa5.14□□□□□ -1.59
NUP116YMR047C BET2P20133 325 aa5.14□□□□□ -1.59
NUP116YMR047C CSE2P33308 149 aa5.14□□□□□ -1.59
NUP116YMR047C TSA1P34760 196 aaKnown RBP5.14□□□□□ -1.59
NUP116YMR047C NEM1P38757 446 aa5.14□□□□□ -1.59
NUP116YMR047C SFB3P38810 929 aa5.14□□□□□ -1.59
NUP116YMR047C BIM1P40013 344 aa5.14□□□□□ -1.59
NUP116YMR047C BET4Q00618 327 aa5.14□□□□□ -1.59
NUP116YMR047C TRP2P00899 507 aaKnown RBP5.13□□□□□ -1.59
NUP116YMR047C STE6P12866 1290 aa5.13□□□□□ -1.59
NUP116YMR047C KAR9P32526 644 aa5.13□□□□□ -1.59
NUP116YMR047C DSS4P32601 143 aa5.13□□□□□ -1.59
NUP116YMR047C HEL1P36113 551 aa5.13□□□□□ -1.59
NUP116YMR047C NUP84P52891 726 aa5.13□□□□□ -1.59
NUP116YMR047C SPC98P53540 846 aa5.13□□□□□ -1.59
NUP116YMR047C ERP4Q12450 207 aa5.13□□□□□ -1.59
NUP116YMR047C MRPL25P23369 157 aa5.13□□□□□ -1.59
NUP116YMR047C MUD1P32605 298 aaKnown RBP5.13□□□□□ -1.59
NUP116YMR047C DSE1P40077 573 aa5.13□□□□□ -1.59
NUP116YMR047C CEG1Q01159 459 aaPredicted RBP5.13□□□□□ -1.59
NUP116YMR047C YPL062WQ02781 134 aa5.13□□□□□ -1.59
NUP116YMR047C NSE1Q07913 336 aa5.13□□□□□ -1.59
NUP116YMR047C TY4A-HQ6Q5P6 413 aa5.13□□□□□ -1.59
NUP116YMR047C VPS3P23643 1011 aa5.13□□□□□ -1.59
NUP116YMR047C PAP1P29468 568 aaKnown RBP5.13□□□□□ -1.59
NUP116YMR047C RAM2P29703 316 aa5.13□□□□□ -1.59
NUP116YMR047C PTC4P38089 393 aa5.13□□□□□ -1.59
NUP116YMR047C MEF2P39677 819 aa5.13□□□□□ -1.59
NUP116YMR047C SAH1P39954 449 aaKnown RBP5.13□□□□□ -1.59
NUP116YMR047C YER034WP40022 185 aaKnown RBP5.13□□□□□ -1.59
NUP116YMR047C PLP1Q04004 230 aa5.13□□□□□ -1.59
NUP116YMR047C GYL1Q04322 720 aa5.13□□□□□ -1.59
NUP116YMR047C YPR084WQ06821 456 aa5.13□□□□□ -1.59
NUP116YMR047C TAF10Q12030 206 aa5.13□□□□□ -1.59
NUP116YMR047C RGP1P16664 663 aa5.12□□□□□ -1.59
NUP116YMR047C YKR051WP36142 418 aa5.12□□□□□ -1.59
NUP116YMR047C POL12P38121 705 aaPredicted RBP5.12□□□□□ -1.59
NUP116YMR047C SAD1P43589 448 aa5.12□□□□□ -1.59
NUP116YMR047C NSE5Q03718 556 aa5.12□□□□□ -1.59
NUP116YMR047C PPM1Q04081 328 aa5.12□□□□□ -1.59
NUP116YMR047C HIS5P07172 385 aa5.12□□□□□ -1.59
NUP116YMR047C NIP100P33420 868 aa5.12□□□□□ -1.59
NUP116YMR047C BCH2P36122 765 aa5.12□□□□□ -1.59
NUP116YMR047C MPT5P39016 859 aaKnown RBP RIP-Chip data5.12□□□□□ -1.59not detected
NUP116YMR047C ERP2P39704 215 aa5.12□□□□□ -1.59
NUP116YMR047C TOF1P53840 1238 aa5.12□□□□□ -1.59
NUP116YMR047C ESBP6P53918 673 aa5.12□□□□□ -1.59
NUP116YMR047C TIM8P57744 87 aa5.12□□□□□ -1.59
NUP116YMR047C LEA1Q08963 238 aaPredicted RBP5.12□□□□□ -1.59
NUP116YMR047C LEU1P07264 779 aaKnown RBP5.12□□□□□ -1.59
NUP116YMR047C CDC42P19073 191 aa5.12□□□□□ -1.59
NUP116YMR047C SSD1P24276 1250 aaKnown RBP RIP-Chip data5.12□□□□□ -1.59not detected
NUP116YMR047C PUF4P25339 888 aaKnown RBP RIP-Chip data5.12□□□□□ -1.59not detected
NUP116YMR047C KIP2P28743 706 aa5.12□□□□□ -1.59
NUP116YMR047C PPS1P38148 807 aa5.12□□□□□ -1.59
NUP116YMR047C FHL1P39521 936 aa5.12□□□□□ -1.59
NUP116YMR047C TGL3P40308 642 aa5.12□□□□□ -1.59
NUP116YMR047C BTT1P40314 149 aaPredicted RBP5.12□□□□□ -1.59
NUP116YMR047C ESF2P53743 316 aaKnown RBP5.12□□□□□ -1.59
NUP116YMR047C KRE33P53914 1056 aaKnown RBP5.12□□□□□ -1.59
NUP116YMR047C YDL206WQ12424 762 aa5.12□□□□□ -1.59
NUP116YMR047C YKL068W-AQ3E826 78 aa5.12□□□□□ -1.59
NUP116YMR047C CDC37P06101 506 aaKnown RBP5.11□□□□□ -1.59
NUP116YMR047C PET494P07390 489 aaPredicted RBP5.11□□□□□ -1.59
NUP116YMR047C APL1P27351 700 aa5.11□□□□□ -1.59
NUP116YMR047C SLD2P34252 453 aa5.11□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms