RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W PHO12P38693 467 aa4.05□□□□□ -1.76
UPF3YGR072W BFA1P47113 574 aa4.05□□□□□ -1.76
UPF3YGR072W YJR120WP47157 116 aa4.05□□□□□ -1.76
UPF3YGR072W NPY1P53164 384 aa4.05□□□□□ -1.76
UPF3YGR072W OSW1Q08692 278 aa4.05□□□□□ -1.76
UPF3YGR072W SLX4Q12098 748 aa4.05□□□□□ -1.76
UPF3YGR072W HMG1P12683 1054 aa4.04□□□□□ -1.76
UPF3YGR072W AEP2P22136 580 aa4.04□□□□□ -1.76
UPF3YGR072W CCR4P31384 837 aaKnown RBP4.04□□□□□ -1.76
UPF3YGR072W APL2P36000 726 aaPredicted RBP4.04□□□□□ -1.76
UPF3YGR072W ENP1P38333 483 aaKnown RBP4.04□□□□□ -1.76
UPF3YGR072W TDA3P38758 523 aa4.04□□□□□ -1.76
UPF3YGR072W RET2P43621 546 aa4.04□□□□□ -1.76
UPF3YGR072W MNN11P46985 422 aaKnown RBP4.04□□□□□ -1.76
UPF3YGR072W BNA3P47039 444 aaKnown RBP4.04□□□□□ -1.76
UPF3YGR072W YGR153WP48238 217 aa4.04□□□□□ -1.76
UPF3YGR072W BPL1P48445 690 aaPredicted RBP4.04□□□□□ -1.76
UPF3YGR072W MRK1P50873 501 aa4.04□□□□□ -1.76
UPF3YGR072W PEX14P53112 341 aa4.04□□□□□ -1.76
UPF3YGR072W COG6P53959 839 aa4.04□□□□□ -1.76
UPF3YGR072W NYV1Q12255 253 aa4.04□□□□□ -1.76
UPF3YGR072W RMP1Q12530 201 aa4.04□□□□□ -1.76
UPF3YGR072W ATP4P05626 244 aa4.03□□□□□ -1.76
UPF3YGR072W OAF1P39720 1047 aaPredicted RBP4.03□□□□□ -1.76
UPF3YGR072W ARG5,6Q01217 863 aa4.03□□□□□ -1.76
UPF3YGR072W VMS1Q04311 632 aaKnown RBP4.03□□□□□ -1.76
UPF3YGR072W YDR338CQ05497 695 aa4.03□□□□□ -1.76
UPF3YGR072W RPN7Q06103 429 aaKnown RBP4.03□□□□□ -1.76
UPF3YGR072W RGC1Q06108 1083 aaKnown RBP4.03□□□□□ -1.76
UPF3YGR072W MLH3Q12083 715 aa4.03□□□□□ -1.76
UPF3YGR072W RGT2Q12300 763 aa4.03□□□□□ -1.76
UPF3YGR072W HRP1Q99383 534 aaKnown RBP4.03□□□□□ -1.76
UPF3YGR072W PTP1P25044 335 aa4.02□□□□□ -1.77
UPF3YGR072W SEC6P32844 805 aa4.02□□□□□ -1.77
UPF3YGR072W TRZ1P36159 838 aaPredicted RBP4.02□□□□□ -1.77
UPF3YGR072W MAL31P38156 614 aa4.02□□□□□ -1.77
UPF3YGR072W MUP3P38734 546 aa4.02□□□□□ -1.77
UPF3YGR072W CCT5P40413 562 aaKnown RBP4.02□□□□□ -1.77
UPF3YGR072W BNA2P47125 453 aa4.02□□□□□ -1.77
UPF3YGR072W SUB1P54000 292 aaKnown RBP4.02□□□□□ -1.77
UPF3YGR072W SND1Q04007 877 aa4.02□□□□□ -1.77
UPF3YGR072W MCM21Q06675 368 aa4.02□□□□□ -1.77
UPF3YGR072W KAR1P11927 433 aa4.01□□□□□ -1.77
UPF3YGR072W THR1P17423 357 aaKnown RBP4.01□□□□□ -1.77
UPF3YGR072W ERG6P25087 383 aaKnown RBP4.01□□□□□ -1.77
UPF3YGR072W EMP65P40085 556 aa4.01□□□□□ -1.77
UPF3YGR072W PEA2P40091 420 aa4.01□□□□□ -1.77
UPF3YGR072W GPD1Q00055 391 aaKnown RBP4.01□□□□□ -1.77
UPF3YGR072W PTA1Q01329 785 aaPredicted RBP4.01□□□□□ -1.77
UPF3YGR072W USV1Q12132 391 aa4.01□□□□□ -1.77
UPF3YGR072W FUB1P25659 250 aa4□□□□□ -1.77
UPF3YGR072W PLC1P32383 869 aa4□□□□□ -1.77
UPF3YGR072W TFC4P33339 1025 aa4□□□□□ -1.77
UPF3YGR072W YKR018CP36114 725 aa4□□□□□ -1.77
UPF3YGR072W YKR075CP36155 307 aa4□□□□□ -1.77
UPF3YGR072W APT2P36973 181 aa4□□□□□ -1.77
UPF3YGR072W STB2P46679 850 aa4□□□□□ -1.77
UPF3YGR072W SLD3P53135 668 aa4□□□□□ -1.77
UPF3YGR072W SPC105P53148 917 aa4□□□□□ -1.77
UPF3YGR072W ORC4P54791 529 aa4□□□□□ -1.77
UPF3YGR072W ZRT2Q12436 422 aa4□□□□□ -1.77
UPF3YGR072W DPB3P27344 201 aa3.99□□□□□ -1.77
UPF3YGR072W YKR051WP36142 418 aa3.99□□□□□ -1.77
UPF3YGR072W GPP2P40106 250 aaKnown RBP3.99□□□□□ -1.77
UPF3YGR072W NIT2P47016 307 aa3.99□□□□□ -1.77
UPF3YGR072W NET1P47035 1189 aa3.99□□□□□ -1.77
UPF3YGR072W MPS1P54199 764 aa3.99□□□□□ -1.77
UPF3YGR072W ECM9Q02202 377 aa3.99□□□□□ -1.77
UPF3YGR072W SKY1Q03656 742 aa3.99□□□□□ -1.77
UPF3YGR072W YHM2Q04013 314 aa3.99□□□□□ -1.77
UPF3YGR072W TDA9Q04545 1251 aa3.99□□□□□ -1.77
UPF3YGR072W YOR378WQ08902 515 aa3.99□□□□□ -1.77
UPF3YGR072W ERG11P10614 530 aa3.98□□□□□ -1.77
UPF3YGR072W YEF3P16521 1044 aaKnown RBP3.98□□□□□ -1.77
UPF3YGR072W MIH1P23748 554 aa3.98□□□□□ -1.77
UPF3YGR072W PWP2P25635 923 aaKnown RBP3.98□□□□□ -1.77
UPF3YGR072W RGT1P32862 1170 aa3.98□□□□□ -1.77
UPF3YGR072W SET3P36124 751 aa3.98□□□□□ -1.77
UPF3YGR072W GMH1P36125 273 aa3.98□□□□□ -1.77
UPF3YGR072W BIT2P38346 545 aa3.98□□□□□ -1.77
UPF3YGR072W GET2P40056 285 aa3.98□□□□□ -1.77
UPF3YGR072W TAN1P53072 289 aaPredicted RBP3.98□□□□□ -1.77
UPF3YGR072W PCL10P53124 433 aa3.98□□□□□ -1.77
UPF3YGR072W CEF1Q03654 590 aaPredicted RBP3.98□□□□□ -1.77
UPF3YGR072W SLK19Q08581 821 aaKnown RBP3.98□□□□□ -1.77
UPF3YGR072W CLF1Q12309 687 aaPredicted RBP3.98□□□□□ -1.77
UPF3YGR072W YLR149CQ99296 730 aa3.98□□□□□ -1.77
UPF3YGR072W SST2P11972 698 aaKnown RBP3.97□□□□□ -1.77
UPF3YGR072W NIC96P34077 839 aa3.97□□□□□ -1.77
UPF3YGR072W YKL133CP36066 463 aa3.97□□□□□ -1.77
UPF3YGR072W RIM4P38741 713 aa3.97□□□□□ -1.77
UPF3YGR072W MIP6P38760 659 aaKnown RBP3.97□□□□□ -1.77
UPF3YGR072W LTP1P40347 161 aa3.97□□□□□ -1.77
UPF3YGR072W XBP1P40489 647 aa3.97□□□□□ -1.77
UPF3YGR072W HMO1Q03973 246 aaKnown RBP3.97□□□□□ -1.77
UPF3YGR072W PHM6Q05637 104 aa3.97□□□□□ -1.77
UPF3YGR072W CIR2Q08822 631 aa3.97□□□□□ -1.77
UPF3YGR072W HFI1Q12060 488 aa3.97□□□□□ -1.77
UPF3YGR072W YPR027CQ12079 277 aa3.97□□□□□ -1.77
UPF3YGR072W MPD2Q99316 277 aa3.97□□□□□ -1.77
Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms