RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 H3BSH0 61 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 M0R233 179 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 SC5DO75845 299 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 ARL6IP5O75915 188 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 IL1AP01583 271 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 HPXP02790 462 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 ADH4P08319 380 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 DNASE1P24855 282 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 RPS11P62280 158 aaKnown RBP eCLIP11.03□□□□□ -0.64
CCDC42-202ENST00000539522 SNRPD2P62316 118 aaKnown RBP11.03□□□□□ -0.64
CCDC42-202ENST00000539522 ZMAT1Q5H9K5 638 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 BCL2L15Q5TBC7 163 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 ASPHD2Q6ICH7 369 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 OR51A4Q8NGJ6 313 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 OR14K1Q8NGZ2 314 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 GPR148Q8TDV2 347 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 PIGTQ969N2 578 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 TRMT61AQ96FX7 289 aaKnown RBP11.03□□□□□ -0.64
CCDC42-202ENST00000539522 PERPQ96FX8 193 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 DCUN1D5Q9BTE7 237 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 RNF167Q9H6Y7 350 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 BEX4Q9NWD9 120 aaPredicted RBP11.03□□□□□ -0.64
CCDC42-202ENST00000539522 GTF2A1LQ9UNN4 478 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 V9GYS6 101 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 NOTCH2Q04721 2471 aa11.03□□□□□ -0.64
CCDC42-202ENST00000539522 ITPR3Q14573 2671 aa11.02□□□□□ -0.64
CCDC42-202ENST00000539522 MYO9AB2RTY4 2548 aa11.02□□□□□ -0.64
CCDC42-202ENST00000539522 TRAV1-2A0A0B4J238 106 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 TRBV5-5A0A0J9YX44 114 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 ZNF879B4DU55 563 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 LYNX1G3V0Z9 82 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 SPRY3O43610 288 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 TIMM8AO60220 97 aaPredicted RBP11.02□□□□□ -0.65
CCDC42-202ENST00000539522 CDRT1O95170 752 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 LYNX1P0DP58 116 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 SELEP16581 610 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 MAPK3P27361 379 aaPredicted RBP11.02□□□□□ -0.65
CCDC42-202ENST00000539522 SOX6P35712 828 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 TGFBR1P36897 503 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 RPS19P39019 145 aaKnown RBP11.02□□□□□ -0.65
CCDC42-202ENST00000539522 MTNR1BP49286 362 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 RORCP51449 518 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 ZNF81P51508 661 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 HOXA4Q00056 320 aaPredicted RBP11.02□□□□□ -0.65
CCDC42-202ENST00000539522 MALLQ13021 153 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 MAB21L1Q13394 359 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 NKPD1Q17RQ9 610 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 Q499Y3 187 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 MRPL21Q7Z2W9 205 aaKnown RBP11.02□□□□□ -0.65
CCDC42-202ENST00000539522 WDR86Q86TI4 376 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 TPRA1Q86W33 373 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 OR10AD1Q8NGE0 317 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 YIPF5Q969M3 257 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 FAM71F1Q96KD3 344 aaPredicted RBP11.02□□□□□ -0.65
CCDC42-202ENST00000539522 TSC22D3Q99576 134 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 RGCCQ9H4X1 137 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 OPA3Q9H6K4 179 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 DCAF16Q9NXF7 216 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 ZNF391Q9UJN7 358 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 RHBDD3Q9Y3P4 386 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 CACNG2Q9Y698 323 aa11.02□□□□□ -0.65
CCDC42-202ENST00000539522 CCDC168Q8NDH2 2452 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 LOC100289279A0A1B0GTE1 492 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 A6NIN4 97 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 F12P00748 615 aaPredicted RBP11.01□□□□□ -0.65
CCDC42-202ENST00000539522 CD55P08174 381 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 UCHL1P09936 223 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 UBCP0CG48 685 aaKnown RBP11.01□□□□□ -0.65
CCDC42-202ENST00000539522 ACHEP22303 614 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 CA6P23280 308 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 COL8A2P25067 703 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 SDC2P34741 201 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 CCL8P80075 99 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 INSL4Q14641 139 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 DMRTC1Q5HYR2 192 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 LRRC75A-AS1Q8N1F1 130 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 UBASH3BQ8TF42 649 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 HPSE2Q8WWQ2 592 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 FOXC2Q99958 501 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 VRK1Q99986 396 aaPredicted RBP11.01□□□□□ -0.65
CCDC42-202ENST00000539522 CXorf56Q9H5V9 222 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 CCDC59Q9P031 241 aaKnown RBP11.01□□□□□ -0.65
CCDC42-202ENST00000539522 GPR160Q9UJ42 338 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 HHLA2Q9UM44 414 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 A3GALT2U3KPV4 340 aa11.01□□□□□ -0.65
CCDC42-202ENST00000539522 ARID1AO14497 2285 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 LOC107986453A0A1B0GWG9 222 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 LOC390937A0A1W2PQ73 354 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 GGT3PA6NGU5 568 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 VSTM5A8MXK1 200 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 F5H5P2 479 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 RP2O75695 350 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 DHRS3O75911 302 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 OCM2P0CE71 109 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 FAHP16930 419 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 SRMP19623 302 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 CFL1P23528 166 aaKnown RBP11□□□□□ -0.65
CCDC42-202ENST00000539522 MYL9P24844 172 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 PMELP40967 661 aa11□□□□□ -0.65
CCDC42-202ENST00000539522 LSAMPQ13449 338 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms