RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 GABREP78334 506 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 NDUFA5Q16718 116 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 SLC22A6Q4U2R8 563 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 C9orf135Q5VTT2 229 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 FDX2Q6P4F2 183 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 Q6ZTK2 550 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 NAXEQ8NCW5 288 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 OR8B12Q8NGG6 310 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 OR56B4Q8NH76 319 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 SIGLEC12Q96PQ1 595 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.81□□□□□ -0.849e-7■■□□□ 14.3
CUX1-212ENST00000547394 CNTD2Q9H8S5 307 aa9.81□□□□□ -0.84
CUX1-212ENST00000547394 A0A1W2PP11 408 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 GGT3PA6NGU5 568 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 FAM166BA8MTA8 275 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 GABARAPH6UMI1 98 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 SLC17A2O00624 439 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 FABP7O15540 132 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 SSNA1O43805 119 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 ZNF432O94892 652 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 GP1BAP07359 652 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 CSNK1A1P48729 337 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 MAP2K6P52564 334 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 SLC35A1P78382 337 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 PCK2Q16822 640 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 SLC25A47Q6Q0C1 308 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 CREB3L2Q70SY1 520 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 ZNF283Q8N7M2 679 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 UXS1Q8NBZ7 420 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 PSMF1Q92530 271 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 ZBTB8AQ96BR9 441 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 MFRPQ9BY79 579 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 GPR84Q9NQS5 396 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 HDGFL3Q9Y3E1 203 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 PCDHGA5Q9Y5G8 931 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 TMEM235A6NFC5 223 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 LRRC3CA6NJW4 275 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 B4E171 279 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 M0QYG6 137 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 AQP8O94778 261 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 ITGA3P26006 1051 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 GDF1P27539 372 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 TSPAN7P41732 249 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 C3AR1Q16581 482 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 OR9K2Q8NGE7 335 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 OR6S1Q8NH40 331 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 OR6X1Q8NH79 312 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 SLC25A28Q96A46 364 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 SFXN2Q96NB2 322 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 EDEM2Q9BV94 578 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 STRADBQ9C0K7 418 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 OR51J1Q9H342 316 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 GHITMQ9H3K2 345 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 SH2D2AQ9NP31 389 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 GLTPQ9NZD2 209 aa9.8□□□□□ -0.84
CUX1-212ENST00000547394 MUC6Q6W4X9 2439 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 LOC100289279A0A1B0GTE1 492 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 DHFRP00374 187 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 CD63P08962 238 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 LIPCP11150 499 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 CX3CR1P49238 355 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 H3F3AP84243 136 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 SRSF6Q13247 344 aaKnown RBP9.79□□□□□ -0.84
CUX1-212ENST00000547394 GSG1Q2KHT4 349 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 HES3Q5TGS1 186 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 ZIC4Q8N9L1 334 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 OR4S1Q8NGB4 309 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 ABHD3Q8WU67 409 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 OR2M2Q96R28 347 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 CIB4A0PJX0 185 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 XRCC3O43542 346 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 GSTZ1O43708 216 aaPredicted RBP9.79□□□□□ -0.84
CUX1-212ENST00000547394 TNFSF15O95150 251 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 CD3DP04234 171 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 RAB40ALP0C0E4 278 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 GTF2F2P13984 249 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 DLX5P56178 289 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 CLDN15P56746 228 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 SFRP5Q5T4F7 317 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 ANKRD16Q6P6B7 361 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 OR4C16Q8NGL9 310 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 SLC25A43Q8WUT9 341 aaPredicted RBP9.79□□□□□ -0.84
CUX1-212ENST00000547394 RAB40AQ8WXH6 277 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 TAAR9Q96RI9 348 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 MICU1Q9BPX6 476 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 PNRC2Q9NPJ4 139 aaKnown RBP9.79□□□□□ -0.84
CUX1-212ENST00000547394 ZNF275Q9NSD4 429 aaPredicted RBP9.79□□□□□ -0.84
CUX1-212ENST00000547394 LRFN1Q9P244 771 aa9.79□□□□□ -0.84
CUX1-212ENST00000547394 ANKRD34BA5PLL1 514 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 CBR3O75828 277 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 ITGB2P05107 769 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 IGFBP3P17936 291 aaPredicted RBP9.78□□□□□ -0.84
CUX1-212ENST00000547394 CD96P40200 585 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 CYB561P49447 251 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 B3GALT5-AS1P59052 145 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 GLT8D1Q68CQ7 371 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 DBX2Q6ZNG2 339 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 CHST4Q8NCG5 386 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 SCMH1Q96GD3 660 aa9.78□□□□□ -0.84
CUX1-212ENST00000547394 HSPB11Q9Y547 144 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms