RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W CMP2P14747 604 aa1.43□□□□□ -2.18
CDC39YCR093W PET127P32606 800 aa1.43□□□□□ -2.18
CDC39YCR093W YJR142WP47173 342 aa1.43□□□□□ -2.18
CDC39YCR093W GTF1P53260 183 aaPredicted RBP1.43□□□□□ -2.18
CDC39YCR093W BRE4Q07660 1125 aa1.43□□□□□ -2.18
CDC39YCR093W YRF1-2P40105 1681 aa1.43□□□□□ -2.18
CDC39YCR093W ACE2P21192 770 aa1.43□□□□□ -2.18
CDC39YCR093W PIH1P38768 344 aa1.43□□□□□ -2.18
CDC39YCR093W YIL108WP40483 696 aaKnown RBP1.43□□□□□ -2.18
CDC39YCR093W TAD1P53065 400 aa1.43□□□□□ -2.18
CDC39YCR093W ALO1P54783 526 aaKnown RBP1.43□□□□□ -2.18
CDC39YCR093W SDH1Q00711 640 aa1.43□□□□□ -2.18
CDC39YCR093W TGS1Q12052 315 aa1.43□□□□□ -2.18
CDC39YCR093W PSF3Q12146 194 aa1.43□□□□□ -2.18
CDC39YCR093W HIS5P07172 385 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-LR4P0C2I8 440 aaKnown RBP1.43□□□□□ -2.18
CDC39YCR093W TY1A-DR6P0CX70 440 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-ER1P0CX71 440 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-LR2P0CX72 440 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-PLP0CX73 440 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-JR1P0CX74 440 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-LR3P0CX75 440 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-ML2P0CX76 440 aa1.43□□□□□ -2.18
CDC39YCR093W GIC1P38785 314 aa1.43□□□□□ -2.18
CDC39YCR093W YHR078WP38799 552 aa1.43□□□□□ -2.18
CDC39YCR093W FMP52P40008 231 aa1.43□□□□□ -2.18
CDC39YCR093W MNN10P50108 393 aaKnown RBP1.43□□□□□ -2.18
CDC39YCR093W TY1A-GR1Q12085 440 aa1.43□□□□□ -2.18
CDC39YCR093W TY1A-PR3Q6Q5H1 440 aaKnown RBP1.43□□□□□ -2.18
CDC39YCR093W TY1A-OLQ92392 440 aaKnown RBP1.43□□□□□ -2.18
CDC39YCR093W BIT2P38346 545 aa1.42□□□□□ -2.18
CDC39YCR093W YEN1P40028 759 aa1.42□□□□□ -2.18
CDC39YCR093W MGS1P40151 587 aa1.42□□□□□ -2.18
CDC39YCR093W NIT1P40447 199 aa1.42□□□□□ -2.18
CDC39YCR093W MND2P40577 368 aa1.42□□□□□ -2.18
CDC39YCR093W YIR042CP40586 236 aa1.42□□□□□ -2.18
CDC39YCR093W UBX6P47049 396 aa1.42□□□□□ -2.18
CDC39YCR093W SIZ1Q04195 904 aa1.42□□□□□ -2.18
CDC39YCR093W VTS1Q08831 523 aaKnown RBP RIP-Chip data1.42□□□□□ -2.18not detected
CDC39YCR093W YPR071WQ12346 211 aa1.42□□□□□ -2.18
CDC39YCR093W RAD18P10862 487 aa1.42□□□□□ -2.18
CDC39YCR093W AFG2P32794 780 aa1.42□□□□□ -2.18
CDC39YCR093W SEG2P34250 1132 aa1.42□□□□□ -2.18
CDC39YCR093W APL3P38065 1025 aa1.42□□□□□ -2.18
CDC39YCR093W SRP68P38687 599 aaKnown RBP1.42□□□□□ -2.18
CDC39YCR093W MPT5P39016 859 aaKnown RBP RIP-Chip data1.42□□□□□ -2.18not detected
CDC39YCR093W PXA1P41909 870 aa1.42□□□□□ -2.18
CDC39YCR093W PFD1P46988 109 aa1.42□□□□□ -2.18
CDC39YCR093W PCL10P53124 433 aa1.42□□□□□ -2.18
CDC39YCR093W MDR1P53258 950 aa1.42□□□□□ -2.18
CDC39YCR093W RNT1Q02555 471 aa1.42□□□□□ -2.18
CDC39YCR093W FCP1Q03254 732 aa1.42□□□□□ -2.18
CDC39YCR093W SPC19Q03954 165 aa1.42□□□□□ -2.18
CDC39YCR093W TGL5Q12043 749 aa1.42□□□□□ -2.18
CDC39YCR093W YLR122CQ12312 125 aa1.42□□□□□ -2.18
CDC39YCR093W GFA1P14742 717 aaKnown RBP1.42□□□□□ -2.18
CDC39YCR093W EMC1P25574 760 aa1.42□□□□□ -2.18
CDC39YCR093W HSP78P33416 811 aa1.42□□□□□ -2.18
CDC39YCR093W POL12P38121 705 aaPredicted RBP1.42□□□□□ -2.18
CDC39YCR093W SAK1P38990 1142 aa1.42□□□□□ -2.18
CDC39YCR093W BUD6P41697 788 aa1.42□□□□□ -2.18
CDC39YCR093W RIM8P53179 542 aa1.42□□□□□ -2.18
CDC39YCR093W YNR029CP53729 429 aaKnown RBP1.42□□□□□ -2.18
CDC39YCR093W MTQ2Q03920 221 aaPredicted RBP1.42□□□□□ -2.18
CDC39YCR093W MCM21Q06675 368 aa1.42□□□□□ -2.18
CDC39YCR093W HBT1Q07653 1046 aaKnown RBP1.42□□□□□ -2.18
CDC39YCR093W YPL216WQ08964 1102 aa1.42□□□□□ -2.18
CDC39YCR093W YDR215CQ12240 137 aa1.42□□□□□ -2.18
CDC39YCR093W HAP1P0CE41 1502 aa1.42□□□□□ -2.18
CDC39YCR093W MSD1P15179 658 aaKnown RBP1.42□□□□□ -2.18
CDC39YCR093W SNF5P18480 905 aa1.42□□□□□ -2.18
CDC39YCR093W SSH4P32343 579 aa1.42□□□□□ -2.18
CDC39YCR093W NIC96P34077 839 aa1.42□□□□□ -2.18
CDC39YCR093W TFA2P36145 328 aa1.42□□□□□ -2.18
CDC39YCR093W SUL1P38359 859 aa1.42□□□□□ -2.18
CDC39YCR093W GDH3P39708 457 aa1.42□□□□□ -2.18
CDC39YCR093W STU2P46675 888 aa1.42□□□□□ -2.18
CDC39YCR093W ACK1Q07622 623 aaPredicted RBP1.42□□□□□ -2.18
CDC39YCR093W XYL2Q07993 356 aa1.42□□□□□ -2.18
CDC39YCR093W NTG2Q08214 380 aa1.42□□□□□ -2.18
CDC39YCR093W YVC1Q12324 675 aa1.42□□□□□ -2.18
CDC39YCR093W GAL10P04397 699 aa1.42□□□□□ -2.18
CDC39YCR093W KTR2P33550 425 aa1.42□□□□□ -2.18
CDC39YCR093W NOC2P39744 710 aaKnown RBP1.42□□□□□ -2.18
CDC39YCR093W GSF2Q04697 403 aaKnown RBP1.42□□□□□ -2.18
CDC39YCR093W VPS5Q92331 675 aa1.42□□□□□ -2.18
CDC39YCR093W DFG16Q99234 619 aa1.42□□□□□ -2.18
CDC39YCR093W RPL8AP17076 256 aaKnown RBP1.41□□□□□ -2.18
CDC39YCR093W KCC4P25389 1037 aa1.41□□□□□ -2.18
CDC39YCR093W VBA3P25594 458 aa1.41□□□□□ -2.18
CDC39YCR093W HBS1P32769 611 aaKnown RBP1.41□□□□□ -2.18
CDC39YCR093W TRM2P33753 639 aa1.41□□□□□ -2.18
CDC39YCR093W SDP1P40479 209 aa1.41□□□□□ -2.18
CDC39YCR093W GNP1P48813 663 aa1.41□□□□□ -2.18
CDC39YCR093W PRP31P49704 494 aaPredicted RBP1.41□□□□□ -2.18
CDC39YCR093W UBA2P52488 636 aa1.41□□□□□ -2.18
CDC39YCR093W ZIP2P53061 704 aa1.41□□□□□ -2.18
CDC39YCR093W YDL073WQ07454 984 aa1.41□□□□□ -2.18
CDC39YCR093W SLX4Q12098 748 aa1.41□□□□□ -2.18
CDC39YCR093W RRP6Q12149 733 aaKnown RBP1.41□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 32.7 ms