RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 CCDC144CPQ8IYA2 1237 aa23.44■■□□□ 1.34
CRLF3-201ENST00000324238 ZNF592Q92610 1267 aa23.43■■□□□ 1.34
CRLF3-201ENST00000324238 GOLIM4O00461 696 aa23.43■■□□□ 1.34
CRLF3-201ENST00000324238 IGSF3O75054 1194 aa23.43■■□□□ 1.34
CRLF3-201ENST00000324238 CLSTN2Q9H4D0 955 aa23.43■■□□□ 1.34
CRLF3-201ENST00000324238 GOLGA6L6A8MZA4 724 aa23.43■■□□□ 1.34
CRLF3-201ENST00000324238 GPHNQ9NQX3 736 aaPredicted RBP23.43■■□□□ 1.34
CRLF3-201ENST00000324238 ZHX1Q9UKY1 873 aaPredicted RBP23.43■■□□□ 1.34
CRLF3-201ENST00000324238 ZNF609O15014 1411 aa23.42■■□□□ 1.34
CRLF3-201ENST00000324238 ATF3P18847 181 aa23.42■■□□□ 1.34
CRLF3-201ENST00000324238 RESTQ13127 1097 aa23.42■■□□□ 1.34
CRLF3-201ENST00000324238 C11orf57Q6ZUT1 292 aaPredicted RBP23.42■■□□□ 1.34
CRLF3-201ENST00000324238 CCDC94Q9BW85 323 aaPredicted RBP23.42■■□□□ 1.34
CRLF3-201ENST00000324238 HDAC5Q9UQL6 1122 aa23.42■■□□□ 1.34
CRLF3-201ENST00000324238 MED1Q15648 1581 aaPredicted RBP23.42■■□□□ 1.34
CRLF3-201ENST00000324238 N4BP2Q86UW6 1770 aaPredicted RBP23.42■■□□□ 1.34
CRLF3-201ENST00000324238 OTUD7BQ6GQQ9 843 aa23.42■■□□□ 1.34
CRLF3-201ENST00000324238 LMBR1LQ6UX01 489 aa23.42■■□□□ 1.34
CRLF3-201ENST00000324238 METTL22Q9BUU2 404 aaPredicted RBP23.42■■□□□ 1.34
CRLF3-201ENST00000324238 ZNF75DP51815 510 aa23.41■■□□□ 1.34
CRLF3-201ENST00000324238 CABP4P57796 275 aa23.41■■□□□ 1.34
CRLF3-201ENST00000324238 ZBTB3Q9H5J0 574 aa23.41■■□□□ 1.34
CRLF3-201ENST00000324238 KDM3BQ7LBC6 1761 aa23.41■■□□□ 1.34
CRLF3-201ENST00000324238 CACTINQ8WUQ7 758 aaKnown RBP23.41■■□□□ 1.34
CRLF3-201ENST00000324238 ZNF594Q96JF6 807 aaPredicted RBP23.41■■□□□ 1.34
CRLF3-201ENST00000324238 HEG1Q9ULI3 1381 aa23.41■■□□□ 1.34
CRLF3-201ENST00000324238 UTYO14607 1347 aa23.4■■□□□ 1.34
CRLF3-201ENST00000324238 ELP1O95163 1332 aa23.4■■□□□ 1.34
CRLF3-201ENST00000324238 RFX5P48382 616 aaPredicted RBP23.4■■□□□ 1.34
CRLF3-201ENST00000324238 CHAF1AQ13111 956 aaPredicted RBP23.4■■□□□ 1.34
CRLF3-201ENST00000324238 TTLL5Q6EMB2 1281 aa23.4■■□□□ 1.34
CRLF3-201ENST00000324238 CLIP2Q9UDT6 1046 aa23.4■■□□□ 1.34
CRLF3-201ENST00000324238 U2AF2P26368 475 aaKnown RBP eCLIP23.4■■□□□ 1.34
CRLF3-201ENST00000324238 GOLPH3LQ9H4A5 285 aa23.4■■□□□ 1.34
CRLF3-201ENST00000324238 CRYBG1Q9Y4K1 1723 aa23.39■■□□□ 1.34
CRLF3-201ENST00000324238 ATP5JP18859 108 aa23.39■■□□□ 1.34
CRLF3-201ENST00000324238 HSP90AB3PQ58FF7 597 aa23.39■■□□□ 1.34
CRLF3-201ENST00000324238 ZSCAN25Q6NSZ9 544 aa23.39■■□□□ 1.34
CRLF3-201ENST00000324238 IFNL2Q8IZJ0 200 aa23.39■■□□□ 1.34
CRLF3-201ENST00000324238 DDX19AQ9NUU7 478 aaKnown RBP23.39■■□□□ 1.33
CRLF3-201ENST00000324238 A1BGP04217 495 aa23.38■■□□□ 1.33
CRLF3-201ENST00000324238 TTLL7Q6ZT98 887 aa23.38■■□□□ 1.33
CRLF3-201ENST00000324238 SNRPA1P09661 255 aaKnown RBP23.38■■□□□ 1.33
CRLF3-201ENST00000324238 MCMDC2Q4G0Z9 681 aa23.38■■□□□ 1.33
CRLF3-201ENST00000324238 FILIP1Q7Z7B0 1213 aa23.38■■□□□ 1.33
CRLF3-201ENST00000324238 CCAR1Q8IX12 1150 aaKnown RBP23.38■■□□□ 1.33
CRLF3-201ENST00000324238 C19orf44Q9H6X5 657 aa23.38■■□□□ 1.33
CRLF3-201ENST00000324238 SNRKQ9NRH2 765 aa23.38■■□□□ 1.33
CRLF3-201ENST00000324238 CTDNEP1O95476 244 aa23.37■■□□□ 1.33
CRLF3-201ENST00000324238 USP28Q96RU2 1077 aa23.37■■□□□ 1.33
CRLF3-201ENST00000324238 GJB4Q9NTQ9 266 aa23.37■■□□□ 1.33
CRLF3-201ENST00000324238 HMG20BQ9P0W2 317 aa23.37■■□□□ 1.33
CRLF3-201ENST00000324238 USP27XA6NNY8 438 aa23.37■■□□□ 1.33
CRLF3-201ENST00000324238 HAND2P61296 217 aa23.37■■□□□ 1.33
CRLF3-201ENST00000324238 MTERF4Q7Z6M4 381 aaKnown RBP23.37■■□□□ 1.33
CRLF3-201ENST00000324238 KDM6AO15550 1401 aaPredicted RBP23.36■■□□□ 1.33
CRLF3-201ENST00000324238 PDCL2Q8N4E4 241 aa23.36■■□□□ 1.33
CRLF3-201ENST00000324238 SYTL4Q96C24 671 aaPredicted RBP23.36■■□□□ 1.33
CRLF3-201ENST00000324238 COPRSQ9NQ92 184 aa23.36■■□□□ 1.33
CRLF3-201ENST00000324238 PRDM4Q9UKN5 801 aa23.36■■□□□ 1.33
CRLF3-201ENST00000324238 PTPDC1A2A3K4 754 aa23.36■■□□□ 1.33
CRLF3-201ENST00000324238 GTF2F1P35269 517 aaKnown RBP eCLIP23.36■■□□□ 1.334e-9■■■■■ 37.4
CRLF3-201ENST00000324238 TRMT1Q9NXH9 659 aaKnown RBP23.36■■□□□ 1.33
CRLF3-201ENST00000324238 NOL12Q9UGY1 213 aaKnown RBP eCLIP23.36■■□□□ 1.33
CRLF3-201ENST00000324238 V9GYY5 206 aaPredicted RBP23.36■■□□□ 1.33
CRLF3-201ENST00000324238 TNNT1P13805 278 aa23.35■■□□□ 1.33
CRLF3-201ENST00000324238 USPL1Q5W0Q7 1092 aa23.35■■□□□ 1.33
CRLF3-201ENST00000324238 TPD52L1Q16890 204 aaPredicted RBP23.35■■□□□ 1.33
CRLF3-201ENST00000324238 NSUN7Q8NE18 718 aaKnown RBP23.35■■□□□ 1.33
CRLF3-201ENST00000324238 PLA2G4DQ86XP0 818 aa23.34■■□□□ 1.33
CRLF3-201ENST00000324238 ADD1P35611 737 aaKnown RBP23.34■■□□□ 1.33
CRLF3-201ENST00000324238 ME1P48163 572 aa23.34■■□□□ 1.33
CRLF3-201ENST00000324238 LRRC24Q50LG9 513 aa23.34■■□□□ 1.33
CRLF3-201ENST00000324238 FMNL2Q96PY5 1086 aa23.34■■□□□ 1.33
CRLF3-201ENST00000324238 U3KPZ7 1027 aaPredicted RBP23.34■■□□□ 1.33
CRLF3-201ENST00000324238 GOLGA6L19H0YKK7 550 aa23.33■■□□□ 1.33
CRLF3-201ENST00000324238 HSPA2P54652 639 aa23.33■■□□□ 1.33
CRLF3-201ENST00000324238 KRT32Q14532 448 aa23.33■■□□□ 1.33
CRLF3-201ENST00000324238 TSGA10IPQ3SY00 556 aa23.33■■□□□ 1.32
CRLF3-201ENST00000324238 STRN4Q9NRL3 753 aa23.33■■□□□ 1.32
CRLF3-201ENST00000324238 MEGF6O75095 1541 aa23.33■■□□□ 1.32
CRLF3-201ENST00000324238 POLR3DP05423 398 aaPredicted RBP23.32■■□□□ 1.32
CRLF3-201ENST00000324238 TDRD7Q8NHU6 1098 aaKnown RBP23.32■■□□□ 1.32
CRLF3-201ENST00000324238 HAUS7Q99871 368 aa23.32■■□□□ 1.32
CRLF3-201ENST00000324238 NBPF26B4DH59 902 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 FKBP4Q02790 459 aaKnown RBP eCLIP23.31■■□□□ 1.32
CRLF3-201ENST00000324238 NBPF14Q5TI25 921 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 ISM2Q6H9L7 571 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 NBPF10Q6P3W6 841 aaKnown RBP23.31■■□□□ 1.32
CRLF3-201ENST00000324238 NBPF15Q8N660 670 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 PUS3Q9BZE2 481 aaKnown RBP23.31■■□□□ 1.32
CRLF3-201ENST00000324238 A0A1B0GVL5 298 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 LRP10Q7Z4F1 713 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 BECN2A8MW95 431 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 TPM3P06753 285 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 TOM1L2Q6ZVM7 507 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 DHX32Q7L7V1 743 aaKnown RBP23.31■■□□□ 1.32
CRLF3-201ENST00000324238 FSIP1Q8NA03 581 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 PAG1Q9NWQ8 432 aa23.31■■□□□ 1.32
CRLF3-201ENST00000324238 CHD2O14647 1828 aaKnown RBP23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms