RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, humanhuman

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-208ENST00000604743 CBLN4Q9NTU7 201 aa12.53□□□□□ -0.4
TUBE1-208ENST00000604743 FAM53CQ9NYF3 392 aa12.53□□□□□ -0.4
TUBE1-208ENST00000604743 CRNNQ9UBG3 495 aaPredicted RBP12.53□□□□□ -0.4
TUBE1-208ENST00000604743 GDF2Q9UK05 429 aaPredicted RBP12.53□□□□□ -0.4
TUBE1-208ENST00000604743 ZNF346Q9UL40 294 aaKnown RBP12.53□□□□□ -0.4
TUBE1-208ENST00000604743 TRBV4-1A0A0J9YWV2 114 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 HTR3EA5X5Y0 456 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 TRIM64A6NGJ6 449 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 TRIM64BA6NI03 449 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 SMAD7O15105 426 aaKnown RBP12.52□□□□□ -0.41
TUBE1-208ENST00000604743 TSPAN19P0C672 248 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 PAX1P15863 534 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 APOBEC3AP31941 199 aaPredicted RBP12.52□□□□□ -0.41
TUBE1-208ENST00000604743 ZNF84P51523 738 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 RAB1AP62820 205 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 SPIBQ01892 262 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 CD47Q08722 323 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 FXNQ16595 210 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 ARMC4Q5T2S8 1044 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 ZNF544Q6NX49 715 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 PIWIL3Q7Z3Z3 882 aaKnown RBP12.52□□□□□ -0.41
TUBE1-208ENST00000604743 HDDC2Q7Z4H3 204 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 SKA3Q8IX90 412 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 SLC22A24Q8N4F4 322 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 SLC7A13Q8TCU3 470 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 NSMAFQ92636 917 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 HDAC2Q92769 488 aaKnown RBP12.52□□□□□ -0.41
TUBE1-208ENST00000604743 FBXO17Q96EF6 278 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 MS4A3Q96HJ5 214 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 SH3GL3Q99963 347 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 GSX1Q9H4S2 264 aaPredicted RBP12.52□□□□□ -0.41
TUBE1-208ENST00000604743 ANKRD19PQ9H560 264 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 MOV10Q9HCE1 1003 aaKnown RBP12.52□□□□□ -0.41
TUBE1-208ENST00000604743 TMEM38BQ9NVV0 291 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 B3GNT2Q9NY97 397 aa12.52□□□□□ -0.41
TUBE1-208ENST00000604743 A0A1W2PRQ8 180 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 H7C1Q1 480 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 CDC42EP2O14613 210 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 FARS2O95363 451 aaKnown RBP12.51□□□□□ -0.41
TUBE1-208ENST00000604743 SLC2A10O95528 541 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 RAB36O95755 333 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 FABP3P05413 133 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 OR8G3PP0DMU2 310 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 ITGA2P17301 1181 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 CALB2P22676 271 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 RPL4P36578 427 aaKnown RBP12.51□□□□□ -0.41
TUBE1-208ENST00000604743 GIPRP48546 466 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 SLC9A3P48764 834 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 RPL27P61353 136 aaKnown RBP12.51□□□□□ -0.41
TUBE1-208ENST00000604743 FMODQ06828 376 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 DGCR6Q14129 220 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 C3orf36Q3SXR2 165 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 ZBED5Q49AG3 693 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 ZNF627Q7L945 461 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 CIARTQ8N365 385 aaPredicted RBP12.51□□□□□ -0.41
TUBE1-208ENST00000604743 CLDN22Q8N7P3 220 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 FAM169BQ8N8A8 192 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 LRRC75AQ8NAA5 344 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 OR4K5Q8NGD3 323 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 FGFBP3Q8TAT2 258 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 BCAS4Q8TDM0 211 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 C18orf12Q96KH6 178 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 TSPAN32Q96QS1 320 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 SEPHS2Q99611 448 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 SMR3AQ99954 134 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 MRPL13Q9BYD1 178 aaKnown RBP12.51□□□□□ -0.41
TUBE1-208ENST00000604743 RNF121Q9H920 327 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 DLL4Q9NR61 685 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 ZNF224Q9NZL3 707 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 STX18Q9P2W9 335 aaKnown RBP12.51□□□□□ -0.41
TUBE1-208ENST00000604743 AURKCQ9UQB9 309 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 TMEM5Q9Y2B1 443 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 RTTNQ86VV8 2226 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 MTORP42345 2549 aa12.51□□□□□ -0.41
TUBE1-208ENST00000604743 IGHV2OR16-5A0A0B4J2B6 119 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 PDE5AO76074 875 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 UBL3O95164 117 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 GADD45GO95257 159 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 IGHV4-39P01824 125 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 SEMG1P04279 462 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 INHBBP09529 407 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 T-ENOLP0DO92 83 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 ATP6V1B2P21281 511 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 CDAP32320 146 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 ERVK-25P63136 954 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 CHRNB3Q05901 458 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 FHL1Q13642 323 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 RAB39AQ14964 217 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 SEC23BQ15437 767 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 TAF11Q15544 211 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 HIST3H3Q16695 136 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 CLEC12BQ2HXU8 276 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 SPATS1Q496A3 300 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 C11orf71Q6IPW1 123 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 KRT80Q6KB66 452 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 TMPRSS11FQ6ZWK6 438 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 SLC16A14Q7RTX9 510 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 LRRC18Q8N456 261 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 OR4F15Q8NGB8 312 aa12.5□□□□□ -0.41
TUBE1-208ENST00000604743 BDH2Q9BUT1 245 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms