RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	STE13	P33894	931 aa		4.91	□□□□□ -1.62
CUP9	YPL177C	NMD2	P38798	1089 aa	Known RBP	4.91	□□□□□ -1.62
CUP9	YPL177C	RFA1	P22336	621 aa	Known RBP	4.9	□□□□□ -1.63
CUP9	YPL177C	SCT1	P32784	759 aa		4.9	□□□□□ -1.63
CUP9	YPL177C	RRP14	P36080	434 aa	Known RBP	4.9	□□□□□ -1.63
CUP9	YPL177C	SPC42	P36094	363 aa		4.9	□□□□□ -1.63
CUP9	YPL177C	SDS3	P40505	327 aa		4.9	□□□□□ -1.63
CUP9	YPL177C	YGR283C	P53336	341 aa	Predicted RBP	4.9	□□□□□ -1.63
CUP9	YPL177C	PEX19	Q07418	342 aa		4.9	□□□□□ -1.63
CUP9	YPL177C	TUB3	P09734	445 aa	Known RBP	4.89	□□□□□ -1.63
CUP9	YPL177C	RPD3	P32561	433 aa		4.89	□□□□□ -1.63
CUP9	YPL177C	SDP1	P40479	209 aa		4.89	□□□□□ -1.63
CUP9	YPL177C	CEP3	P40969	608 aa		4.89	□□□□□ -1.63
CUP9	YPL177C	AIM44	Q99299	758 aa		4.89	□□□□□ -1.63
CUP9	YPL177C	MPH2	P0CD99	609 aa		4.88	□□□□□ -1.63
CUP9	YPL177C	MSH2	P25847	964 aa		4.88	□□□□□ -1.63
CUP9	YPL177C	CTF13	P35203	478 aa		4.88	□□□□□ -1.63
CUP9	YPL177C	EMC3	P36039	253 aa		4.88	□□□□□ -1.63
CUP9	YPL177C	NIT3	P49954	291 aa		4.88	□□□□□ -1.63
CUP9	YPL177C	FRE5	Q08908	694 aa		4.88	□□□□□ -1.63
CUP9	YPL177C	MEF1	P25039	761 aa		4.87	□□□□□ -1.63
CUP9	YPL177C	URA1	P28272	314 aa	Predicted RBP	4.87	□□□□□ -1.63
CUP9	YPL177C	SPC29	P33419	253 aa		4.87	□□□□□ -1.63
CUP9	YPL177C	PPS1	P38148	807 aa		4.87	□□□□□ -1.63
CUP9	YPL177C	CTF8	P38877	133 aa		4.87	□□□□□ -1.63
CUP9	YPL177C	TY4A-J	P47023	414 aa		4.87	□□□□□ -1.63
CUP9	YPL177C	HDA1	P53973	706 aa		4.87	□□□□□ -1.63
CUP9	YPL177C	POB3	Q04636	552 aa	Known RBP	4.87	□□□□□ -1.63
CUP9	YPL177C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
CUP9	YPL177C	DAL7	P21826	554 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	PER1	P25625	357 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	DSS1	P39112	969 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	DAM1	P53267	343 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	HBT1	Q07653	1046 aa	Known RBP	4.86	□□□□□ -1.63
CUP9	YPL177C	NTG2	Q08214	380 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	MET7	Q08645	548 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	TRM11	Q12463	433 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	MDM12	Q92328	271 aa		4.86	□□□□□ -1.63
CUP9	YPL177C	RPS9A	O13516	197 aa	Known RBP	4.85	□□□□□ -1.63
CUP9	YPL177C	YCL002C	P25565	263 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	PEX6	P33760	1030 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	MNN1	P39106	762 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	ELO3	P40319	345 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	YIL108W	P40483	696 aa	Known RBP	4.85	□□□□□ -1.63
CUP9	YPL177C	SNM1	P40993	198 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	TAD1	P53065	400 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	VPS30	Q02948	557 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	LRS4	Q04087	347 aa	Known RBP	4.85	□□□□□ -1.63
CUP9	YPL177C	YDR514C	Q04408	483 aa		4.85	□□□□□ -1.63
CUP9	YPL177C	CDC9	P04819	755 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	MET3	P08536	511 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	VBA3	P25594	458 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	CYS3	P31373	394 aa	Known RBP	4.84	□□□□□ -1.63
CUP9	YPL177C	YHL017W	P38745	532 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	NOG2	P53742	486 aa	Known RBP	4.84	□□□□□ -1.63
CUP9	YPL177C	YKR011C	Q02209	353 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	DLT1	Q04216	342 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	ADY4	Q05955	493 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	MRH1	Q12117	320 aa	Predicted RBP	4.84	□□□□□ -1.63
CUP9	YPL177C	SUT2	Q12286	268 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	NDJ1	Q12366	352 aa		4.84	□□□□□ -1.63
CUP9	YPL177C	PRP4	P20053	465 aa	Known RBP	4.83	□□□□□ -1.64
CUP9	YPL177C	TYE7	P33122	291 aa	Predicted RBP	4.83	□□□□□ -1.64
CUP9	YPL177C	BRN1	P38170	754 aa		4.83	□□□□□ -1.64
CUP9	YPL177C	MRPS35	P53292	345 aa		4.83	□□□□□ -1.64
CUP9	YPL177C	ATP25	Q03153	612 aa		4.83	□□□□□ -1.64
CUP9	YPL177C	UGO1	Q03327	502 aa		4.83	□□□□□ -1.64
CUP9	YPL177C	RSC3	Q06639	885 aa		4.83	□□□□□ -1.64
CUP9	YPL177C	DAS1	P47005	663 aa		4.82	□□□□□ -1.64
CUP9	YPL177C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
CUP9	YPL177C	REH1	Q06709	432 aa		4.82	□□□□□ -1.64
CUP9	YPL177C	YOR022C	Q12204	715 aa		4.82	□□□□□ -1.64
CUP9	YPL177C	GSY1	P23337	708 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	MTC2	P34246	357 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	SAP190	P36123	1033 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	PUS2	P53167	370 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	DNM1	P54861	757 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	TFB2	Q02939	513 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	HAL9	Q12180	1030 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	SWM1	Q12379	170 aa		4.81	□□□□□ -1.64
CUP9	YPL177C	NOP14	Q99207	810 aa	Known RBP	4.81	□□□□□ -1.64
CUP9	YPL177C	PRC1	P00729	532 aa		4.8	□□□□□ -1.64
CUP9	YPL177C	FKH2	P41813	862 aa		4.8	□□□□□ -1.64
CUP9	YPL177C	HXT16	P47185	567 aa		4.8	□□□□□ -1.64
CUP9	YPL177C	MUP1	P50276	574 aa		4.8	□□□□□ -1.64
CUP9	YPL177C	BNR1	P40450	1375 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	RAD18	P10862	487 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	CAF20	P12962	161 aa	Known RBP	4.79	□□□□□ -1.64
CUP9	YPL177C	RPL8A	P17076	256 aa	Known RBP	4.79	□□□□□ -1.64
CUP9	YPL177C	STO1	P34160	861 aa	Known RBP	4.79	□□□□□ -1.64
CUP9	YPL177C	MCD4	P36051	919 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	YBR053C	P38235	358 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	RPP1	P38786	293 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	ALY2	P47029	1046 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	YJR142W	P47173	342 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	DUS1	P53759	423 aa	Known RBP	4.79	□□□□□ -1.64
CUP9	YPL177C	YBR182C-A	Q8TGU6	64 aa		4.79	□□□□□ -1.64
CUP9	YPL177C	SRD1	P09007	221 aa		4.78	□□□□□ -1.64
CUP9	YPL177C	PEX2	P32800	271 aa		4.78	□□□□□ -1.64
CUP9	YPL177C	YHR078W	P38799	552 aa		4.78	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 54.5 ms