RNA–Protein interactions for RNA: YPL045W

VPS16, Transcript of Subunit of the HOPS and the CORVET complexes, yeast

Gene VPS16, Length 2,397 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS16	YPL045W	TNA1	P53322	534 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	CAF120	P53836	1060 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	MOT3	P54785	490 aa	Known RBP	2.71	□□□□□ -1.98
VPS16	YPL045W	PTA1	Q01329	785 aa	Predicted RBP	2.71	□□□□□ -1.98
VPS16	YPL045W	VPS30	Q02948	557 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	TRS130	Q03660	1102 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	CIA1	Q05583	330 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	YPR196W	Q06595	470 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	GPM1	P00950	247 aa	Known RBP	2.71	□□□□□ -1.98
VPS16	YPL045W	TRK1	P12685	1235 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	PHO81	P17442	1178 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	SEC18	P18759	758 aa	Known RBP	2.71	□□□□□ -1.98
VPS16	YPL045W	HOP1	P20050	605 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	HCA4	P20448	770 aa	Known RBP	2.71	□□□□□ -1.98
VPS16	YPL045W	ACE2	P21192	770 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	FUN30	P31380	1131 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	BEM3	P32873	1128 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	MNT3	P40549	630 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	CEP3	P40969	608 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	TPP1	Q03796	238 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	PUS7	Q08647	676 aa	Known RBP	2.71	□□□□□ -1.98
VPS16	YPL045W	DCS2	Q12123	353 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	ERP4	Q12450	207 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	2.71	□□□□□ -1.98	not detected
VPS16	YPL045W	Q0142	Q9ZZW4	58 aa		2.71	□□□□□ -1.98
VPS16	YPL045W	DIF1	O13577	133 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	INH1	P01097	85 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	RFA1	P22336	621 aa	Known RBP	2.7	□□□□□ -1.98
VPS16	YPL045W	MSM1	P22438	575 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	URA1	P28272	314 aa	Predicted RBP	2.7	□□□□□ -1.98
VPS16	YPL045W	CYS3	P31373	394 aa	Known RBP	2.7	□□□□□ -1.98
VPS16	YPL045W	PET309	P32522	965 aa	Predicted RBP	2.7	□□□□□ -1.98
VPS16	YPL045W	RRT14	P40470	206 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	SHR5	P41912	237 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	IML2	P47031	731 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	ALT1	P52893	592 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	CRR1	Q05790	422 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	RPN7	Q06103	429 aa	Known RBP	2.7	□□□□□ -1.98
VPS16	YPL045W	NEW1	Q08972	1196 aa	Known RBP	2.7	□□□□□ -1.98
VPS16	YPL045W	YDR056C	Q12025	205 aa		2.7	□□□□□ -1.98
VPS16	YPL045W	CHS3	P29465	1165 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	SEC65	P29478	273 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	YKR018C	P36114	725 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	NDE1	P40215	560 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	BRE2	P43132	505 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	HDA1	P53973	706 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	HIM1	Q06674	414 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	SIN3	P22579	1536 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	NAM7	P30771	971 aa	Known RBP	2.69	□□□□□ -1.98
VPS16	YPL045W	SAP190	P36123	1033 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	SET5	P38890	526 aa	Known RBP	2.69	□□□□□ -1.98
VPS16	YPL045W	PIK1	P39104	1066 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	YFL052W	P43551	465 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	BNA2	P47125	453 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	ASK10	P48361	1146 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	RNR4	P49723	345 aa	Known RBP	2.69	□□□□□ -1.98
VPS16	YPL045W	HFM1	P51979	1187 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	TEP1	P53916	434 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	GTR1	Q00582	310 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	EAR1	Q03212	550 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	CLF1	Q12309	687 aa	Predicted RBP	2.69	□□□□□ -1.98
VPS16	YPL045W	NHA1	Q99271	985 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	YLR149C	Q99296	730 aa		2.69	□□□□□ -1.98
VPS16	YPL045W	XRN1	P22147	1528 aa	Known RBP	2.69	□□□□□ -1.98
VPS16	YPL045W	FOB1	O13329	566 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	COQ4	O13525	335 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	NOT3	P06102	836 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	MSH1	P25846	959 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	SHM2	P37291	469 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	MAL31	P38156	614 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	ECM21	P38167	1117 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	CCZ1	P38273	704 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	TMA108	P40462	946 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	MEP3	P53390	489 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	ARP4	P80428	489 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	HLR1	Q04429	423 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	OMS1	Q06668	471 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	XYL2	Q07993	356 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	YOR059C	Q08448	450 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	OSW2	Q12202	724 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	YOR022C	Q12204	715 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	TY1A-NL1	Q12391	440 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	REV3	P14284	1504 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	PRC1	P00729	532 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	RPS4A	P0CX35	261 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	RPS4B	P0CX36	261 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	GLN4	P13188	809 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	SAM35	P14693	329 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	RPC82	P32349	654 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	IMP2'	P32351	346 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	TYE7	P33122	291 aa	Predicted RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	STE13	P33894	931 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	FLR1	P38124	548 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	PSY4	P38193	441 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	SSZ1	P38788	538 aa	Known RBP	2.68	□□□□□ -1.98
VPS16	YPL045W	YIL092W	P40497	633 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	YIR007W	P40566	764 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	SDH1	Q00711	640 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	GCR2	Q01722	534 aa		2.68	□□□□□ -1.98
VPS16	YPL045W	YKR011C	Q02209	353 aa		2.68	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 45.3 ms