RNA–Protein interactions for RNA: YFL002C

SPB4, Transcript of Putative ATP-dependent RNA helicase, yeast

Gene SPB4, Length 1,821 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPB4	YFL002C	LSB3	P43603	459 aa	Known RBP	4.75	□□□□□ -1.65
SPB4	YFL002C	ALT1	P52893	592 aa		4.75	□□□□□ -1.65
SPB4	YFL002C	NPY1	P53164	384 aa		4.75	□□□□□ -1.65
SPB4	YFL002C	RCL1	Q08096	367 aa	Predicted RBP	4.75	□□□□□ -1.65
SPB4	YFL002C	SSP2	Q08646	371 aa		4.75	□□□□□ -1.65
SPB4	YFL002C	RPS21B	Q3E754	87 aa	Known RBP	4.75	□□□□□ -1.65
SPB4	YFL002C	YOL087C	Q99247	1116 aa		4.75	□□□□□ -1.65
SPB4	YFL002C	ACE2	P21192	770 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	URA1	P28272	314 aa	Predicted RBP	4.74	□□□□□ -1.65
SPB4	YFL002C	RPT2	P40327	437 aa	Known RBP	4.74	□□□□□ -1.65
SPB4	YFL002C	YOL114C	Q12322	202 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	NHA1	Q99271	985 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	HCA4	P20448	770 aa	Known RBP	4.74	□□□□□ -1.65
SPB4	YFL002C	MSM1	P22438	575 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	CYS3	P31373	394 aa	Known RBP	4.74	□□□□□ -1.65
SPB4	YFL002C	PET309	P32522	965 aa	Predicted RBP	4.74	□□□□□ -1.65
SPB4	YFL002C	YKR051W	P36142	418 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	YAP1801	P38856	637 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	HOS4	P40480	1083 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	IML2	P47031	731 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	TRS130	Q03660	1102 aa		4.74	□□□□□ -1.65
SPB4	YFL002C	RPN7	Q06103	429 aa	Known RBP	4.74	□□□□□ -1.65
SPB4	YFL002C	RPS4A	P0CX35	261 aa	Known RBP	4.73	□□□□□ -1.65
SPB4	YFL002C	RPS4B	P0CX36	261 aa	Known RBP	4.73	□□□□□ -1.65
SPB4	YFL002C	HOP1	P20050	605 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	SEC65	P29478	273 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	MCM10	P32354	571 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	MAL31	P38156	614 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	FAT1	P38225	669 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	CCZ1	P38273	704 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	SET5	P38890	526 aa	Known RBP	4.73	□□□□□ -1.65
SPB4	YFL002C	SHR5	P41912	237 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	BNA2	P47125	453 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	RNR4	P49723	345 aa	Known RBP	4.73	□□□□□ -1.65
SPB4	YFL002C	UBA2	P52488	636 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	CEG1	Q01159	459 aa	Predicted RBP	4.73	□□□□□ -1.65
SPB4	YFL002C	VPS30	Q02948	557 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	OPY2	Q06810	360 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	NEW1	Q08972	1196 aa	Known RBP	4.73	□□□□□ -1.65
SPB4	YFL002C	OSW2	Q12202	724 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	DPH6	Q12429	685 aa		4.73	□□□□□ -1.65
SPB4	YFL002C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.73	□□□□□ -1.65	not detected
SPB4	YFL002C	NAM7	P30771	971 aa	Known RBP	4.72	□□□□□ -1.65
SPB4	YFL002C	MNN4	P36044	1178 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	YKR018C	P36114	725 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	SAP190	P36123	1033 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	MNT3	P40549	630 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	ERR3	P42222	437 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	HDA1	P53973	706 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	CRR1	Q05790	422 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	ERP4	Q12450	207 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	INH1	P01097	85 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	NOT3	P06102	836 aa	Known RBP	4.72	□□□□□ -1.65
SPB4	YFL002C	SEC18	P18759	758 aa	Known RBP	4.72	□□□□□ -1.65
SPB4	YFL002C	BEM3	P32873	1128 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	ECM21	P38167	1117 aa	Known RBP	4.72	□□□□□ -1.65
SPB4	YFL002C	CEP3	P40969	608 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	YFL052W	P43551	465 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	HFM1	P51979	1187 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	HOL1	P53389	586 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	TEP1	P53916	434 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	YPL277C	Q08989	487 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	DCS2	Q12123	353 aa		4.72	□□□□□ -1.65
SPB4	YFL002C	TY1A-NL1	Q12391	440 aa	Known RBP	4.72	□□□□□ -1.65
SPB4	YFL002C	RPS9A	O13516	197 aa	Known RBP	4.71	□□□□□ -1.66
SPB4	YFL002C	ATP12	P22135	325 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	SRO9	P25567	434 aa	Known RBP	4.71	□□□□□ -1.66
SPB4	YFL002C	MSH1	P25846	959 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	STE13	P33894	931 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	JNM1	P36224	373 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	ASK10	P48361	1146 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	CIA1	Q05583	330 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	THI21	Q08975	551 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	YLR149C	Q99296	730 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	Q0142	Q9ZZW4	58 aa		4.71	□□□□□ -1.66
SPB4	YFL002C	PRC1	P00729	532 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	CHS3	P29465	1165 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	NFU1	P32860	256 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	BFA1	P47113	574 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	SDH1	Q00711	640 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	YKR011C	Q02209	353 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	EAR1	Q03212	550 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	BLS1	Q06071	122 aa		4.7	□□□□□ -1.66
SPB4	YFL002C	SAM35	P14693	329 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	TYE7	P33122	291 aa	Predicted RBP	4.69	□□□□□ -1.66
SPB4	YFL002C	FLR1	P38124	548 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	RRM3	P38766	723 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	TMA108	P40462	946 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	YJR039W	P47107	1121 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	ZIP2	P53061	704 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	GTR1	Q00582	310 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	HLR1	Q04429	423 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	HIM1	Q06674	414 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	RSB1	Q08417	382 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	YDR056C	Q12025	205 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	PHM7	Q12252	991 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	SVS1	Q12254	260 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	CLF1	Q12309	687 aa	Predicted RBP	4.69	□□□□□ -1.66
SPB4	YFL002C	SWI6	P09959	803 aa		4.69	□□□□□ -1.66
SPB4	YFL002C	IMP2'	P32351	346 aa		4.69	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms