RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	SSY5	P47002	699 aa		4.65	□□□□□ -1.67
RSM28	YDR494W	TIM54	P47045	478 aa		4.65	□□□□□ -1.67
RSM28	YDR494W	AMA1	P50082	593 aa		4.65	□□□□□ -1.67
RSM28	YDR494W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
RSM28	YDR494W	HSP60	P19882	572 aa	Known RBP	4.64	□□□□□ -1.67
RSM28	YDR494W	YCL002C	P25565	263 aa		4.64	□□□□□ -1.67
RSM28	YDR494W	NGG1	P32494	702 aa		4.64	□□□□□ -1.67
RSM28	YDR494W	SAK1	P38990	1142 aa		4.64	□□□□□ -1.67
RSM28	YDR494W	GYP8	P43570	497 aa		4.64	□□□□□ -1.67
RSM28	YDR494W	YJL163C	P46996	555 aa		4.64	□□□□□ -1.67
RSM28	YDR494W	TAD1	P53065	400 aa		4.64	□□□□□ -1.67
RSM28	YDR494W	LRS4	Q04087	347 aa	Known RBP	4.64	□□□□□ -1.67
RSM28	YDR494W	MRH1	Q12117	320 aa	Predicted RBP	4.64	□□□□□ -1.67
RSM28	YDR494W	YOL098C	Q12496	1037 aa		4.64	□□□□□ -1.67
RSM28	YDR494W	YLR415C	O13578	112 aa		4.63	□□□□□ -1.67
RSM28	YDR494W	PRC1	P00729	532 aa		4.63	□□□□□ -1.67
RSM28	YDR494W	CIT1	P00890	479 aa		4.63	□□□□□ -1.67
RSM28	YDR494W	CUE2	P36075	443 aa	Known RBP	4.63	□□□□□ -1.67
RSM28	YDR494W	OCA5	P38738	679 aa		4.63	□□□□□ -1.67
RSM28	YDR494W	GGA2	P38817	585 aa	Known RBP	4.63	□□□□□ -1.67
RSM28	YDR494W	PFA3	P42836	336 aa		4.63	□□□□□ -1.67
RSM28	YDR494W	YGR283C	P53336	341 aa	Predicted RBP	4.63	□□□□□ -1.67
RSM28	YDR494W	NRG1	Q03125	231 aa		4.63	□□□□□ -1.67
RSM28	YDR494W	CRR1	Q05790	422 aa		4.63	□□□□□ -1.67
RSM28	YDR494W	YIR042C	P40586	236 aa		4.62	□□□□□ -1.67
RSM28	YDR494W	YGR125W	P53273	1036 aa		4.62	□□□□□ -1.67
RSM28	YDR494W	LGE1	Q02796	332 aa	Known RBP	4.62	□□□□□ -1.67
RSM28	YDR494W	TAF8	Q03750	510 aa		4.62	□□□□□ -1.67
RSM28	YDR494W	YDL124W	Q07551	312 aa	Known RBP	4.62	□□□□□ -1.67
RSM28	YDR494W	THI21	Q08975	551 aa		4.62	□□□□□ -1.67
RSM28	YDR494W	CDC53	Q12018	815 aa	Known RBP	4.62	□□□□□ -1.67
RSM28	YDR494W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
RSM28	YDR494W	SRP40	P32583	406 aa	Predicted RBP	4.61	□□□□□ -1.67
RSM28	YDR494W	PCL5	P38794	229 aa		4.61	□□□□□ -1.67
RSM28	YDR494W	HUL5	P53119	910 aa		4.61	□□□□□ -1.67
RSM28	YDR494W	DAM1	P53267	343 aa		4.61	□□□□□ -1.67
RSM28	YDR494W	NSE3	Q05541	303 aa		4.61	□□□□□ -1.67
RSM28	YDR494W	RSC3	Q06639	885 aa		4.61	□□□□□ -1.67
RSM28	YDR494W	IRC13	Q08630	104 aa		4.61	□□□□□ -1.67
RSM28	YDR494W	SUT2	Q12286	268 aa		4.61	□□□□□ -1.67
RSM28	YDR494W	LAT1	P12695	482 aa	Known RBP	4.6	□□□□□ -1.67
RSM28	YDR494W	SAP190	P36123	1033 aa		4.6	□□□□□ -1.67
RSM28	YDR494W	YHR020W	P38708	688 aa	Known RBP	4.6	□□□□□ -1.67
RSM28	YDR494W	HUL4	P40985	892 aa		4.6	□□□□□ -1.67
RSM28	YDR494W	RIA1	P53893	1110 aa		4.6	□□□□□ -1.67
RSM28	YDR494W	REH1	Q06709	432 aa		4.6	□□□□□ -1.67
RSM28	YDR494W	BDF2	Q07442	638 aa		4.6	□□□□□ -1.67
RSM28	YDR494W	GPR1	Q12361	961 aa		4.6	□□□□□ -1.67
RSM28	YDR494W	YOR131C	Q12486	218 aa		4.6	□□□□□ -1.67
RSM28	YDR494W	TOM70	P07213	617 aa	Known RBP	4.59	□□□□□ -1.67
RSM28	YDR494W	YKL091C	P33324	310 aa	Known RBP	4.59	□□□□□ -1.67
RSM28	YDR494W	BET3	P36149	193 aa		4.59	□□□□□ -1.67
RSM28	YDR494W	SIC1	P38634	284 aa		4.59	□□□□□ -1.67
RSM28	YDR494W	SET5	P38890	526 aa	Known RBP	4.59	□□□□□ -1.67
RSM28	YDR494W	FLC1	Q08967	793 aa		4.59	□□□□□ -1.67
RSM28	YDR494W	TGL5	Q12043	749 aa		4.59	□□□□□ -1.67
RSM28	YDR494W	TDP1	P38319	544 aa		4.58	□□□□□ -1.68
RSM28	YDR494W	HOS4	P40480	1083 aa		4.58	□□□□□ -1.68
RSM28	YDR494W	ALG2	P43636	503 aa		4.58	□□□□□ -1.68
RSM28	YDR494W	YDR514C	Q04408	483 aa		4.58	□□□□□ -1.68
RSM28	YDR494W	ASM4	Q05166	528 aa		4.58	□□□□□ -1.68
RSM28	YDR494W	YBR182C-A	Q8TGU6	64 aa		4.58	□□□□□ -1.68
RSM28	YDR494W	GFA1	P14742	717 aa	Known RBP	4.57	□□□□□ -1.68
RSM28	YDR494W	HSV2	P50079	448 aa	Predicted RBP	4.57	□□□□□ -1.68
RSM28	YDR494W	ATP25	Q03153	612 aa		4.57	□□□□□ -1.68
RSM28	YDR494W	SGO1	Q08490	590 aa		4.57	□□□□□ -1.68
RSM28	YDR494W	MET7	Q08645	548 aa		4.57	□□□□□ -1.68
RSM28	YDR494W	NDJ1	Q12366	352 aa		4.57	□□□□□ -1.68
RSM28	YDR494W	ATG11	Q12527	1178 aa		4.57	□□□□□ -1.68
RSM28	YDR494W	YTA7	P40340	1379 aa		4.56	□□□□□ -1.68
RSM28	YDR494W	BCD1	P38772	366 aa		4.56	□□□□□ -1.68
RSM28	YDR494W	RSP5	P39940	809 aa	Known RBP	4.56	□□□□□ -1.68
RSM28	YDR494W	FMP52	P40008	231 aa		4.56	□□□□□ -1.68
RSM28	YDR494W	TAH11	P47112	604 aa		4.56	□□□□□ -1.68
RSM28	YDR494W	RTA1	P53047	317 aa		4.56	□□□□□ -1.68
RSM28	YDR494W	VPS73	P53142	486 aa	Known RBP	4.56	□□□□□ -1.68
RSM28	YDR494W	CDC43	P18898	376 aa		4.55	□□□□□ -1.68
RSM28	YDR494W	GAL11	P19659	1081 aa		4.55	□□□□□ -1.68
RSM28	YDR494W	HIS7	P33734	552 aa	Known RBP	4.55	□□□□□ -1.68
RSM28	YDR494W	YBR259W	P38338	688 aa		4.55	□□□□□ -1.68
RSM28	YDR494W	RLP7	P40693	322 aa	Known RBP	4.55	□□□□□ -1.68
RSM28	YDR494W	HXT16	P47185	567 aa		4.55	□□□□□ -1.68
RSM28	YDR494W	MTR3	P48240	250 aa	Predicted RBP	4.55	□□□□□ -1.68
RSM28	YDR494W	ZIP2	P53061	704 aa		4.55	□□□□□ -1.68
RSM28	YDR494W	BNR1	P40450	1375 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	CAN1	P04817	590 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
RSM28	YDR494W	KIN3	P22209	435 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	BAP3	P41815	604 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	SHR5	P41912	237 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	TY4A-J	P47023	414 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	ZDS1	P50111	915 aa	Known RBP	4.54	□□□□□ -1.68
RSM28	YDR494W	UBC11	P52492	156 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	TEL2	P53038	688 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	TEX1	P53851	422 aa	Known RBP	4.54	□□□□□ -1.68
RSM28	YDR494W	SSL2	Q00578	843 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	RPN4	Q03465	531 aa		4.54	□□□□□ -1.68
RSM28	YDR494W	DIF1	O13577	133 aa		4.53	□□□□□ -1.68
RSM28	YDR494W	HCA4	P20448	770 aa	Known RBP	4.53	□□□□□ -1.68
RSM28	YDR494W	PEX2	P32800	271 aa		4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 98.4 ms