RNA–Protein interactions for RNA: YDR339C

FCF1, Transcript of Putative PINc domain nuclease, yeast

Gene FCF1, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
FCF1	YDR339C	PEX6	P33760	1030 aa		4.69	□□□□□ -1.66
FCF1	YDR339C	TSL1	P38427	1098 aa	Known RBP	4.69	□□□□□ -1.66
FCF1	YDR339C	HSV2	P50079	448 aa	Predicted RBP	4.69	□□□□□ -1.66
FCF1	YDR339C	YNR029C	P53729	429 aa	Known RBP	4.69	□□□□□ -1.66
FCF1	YDR339C	YOL057W	Q08225	711 aa		4.69	□□□□□ -1.66
FCF1	YDR339C	NOT3	P06102	836 aa	Known RBP	4.68	□□□□□ -1.66
FCF1	YDR339C	NPP1	P25353	742 aa		4.68	□□□□□ -1.66
FCF1	YDR339C	RPD3	P32561	433 aa		4.68	□□□□□ -1.66
FCF1	YDR339C	ERG5	P54781	538 aa		4.68	□□□□□ -1.66
FCF1	YDR339C	VMS1	Q04311	632 aa	Known RBP	4.68	□□□□□ -1.66
FCF1	YDR339C	ALG7	P07286	448 aa		4.67	□□□□□ -1.66
FCF1	YDR339C	ENP1	P38333	483 aa	Known RBP	4.67	□□□□□ -1.66
FCF1	YDR339C	GDH3	P39708	457 aa		4.67	□□□□□ -1.66
FCF1	YDR339C	QRI1	P43123	477 aa	Known RBP	4.67	□□□□□ -1.66
FCF1	YDR339C	ZDS1	P50111	915 aa	Known RBP	4.67	□□□□□ -1.66
FCF1	YDR339C	RNT1	Q02555	471 aa		4.67	□□□□□ -1.66
FCF1	YDR339C	LGE1	Q02796	332 aa	Known RBP	4.67	□□□□□ -1.66
FCF1	YDR339C	TFB2	Q02939	513 aa		4.67	□□□□□ -1.66
FCF1	YDR339C	CEF1	Q03654	590 aa	Predicted RBP	4.67	□□□□□ -1.66
FCF1	YDR339C	YDR306C	Q06640	478 aa		4.67	□□□□□ -1.66
FCF1	YDR339C	ACF2	Q12168	779 aa		4.67	□□□□□ -1.66
FCF1	YDR339C	SPT6	P23615	1451 aa	Known RBP	4.67	□□□□□ -1.66
FCF1	YDR339C	NUP145	P49687	1317 aa		4.67	□□□□□ -1.66
FCF1	YDR339C	TOM70	P07213	617 aa	Known RBP	4.66	□□□□□ -1.66
FCF1	YDR339C	RPC82	P32349	654 aa		4.66	□□□□□ -1.66
FCF1	YDR339C	SWE1	P32944	819 aa		4.66	□□□□□ -1.66
FCF1	YDR339C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
FCF1	YDR339C	STU2	P46675	888 aa		4.66	□□□□□ -1.66
FCF1	YDR339C	YGR237C	P50089	785 aa		4.66	□□□□□ -1.66
FCF1	YDR339C	RTA1	P53047	317 aa		4.66	□□□□□ -1.66
FCF1	YDR339C	CDC48	P25694	835 aa	Known RBP	4.65	□□□□□ -1.67
FCF1	YDR339C	SEC21	P32074	935 aa	Known RBP	4.65	□□□□□ -1.67
FCF1	YDR339C	PPH3	P32345	308 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	AFR1	P33304	620 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	MTH1	P35198	433 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	BET3	P36149	193 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	GND2	P53319	492 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	OMS1	Q06668	471 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	PEX19	Q07418	342 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	IRC10	Q08118	586 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	MDM12	Q92328	271 aa		4.65	□□□□□ -1.67
FCF1	YDR339C	IKI3	Q06706	1349 aa	Known RBP	4.65	□□□□□ -1.67
FCF1	YDR339C	UFD4	P33202	1483 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	HSL1	P34244	1518 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	PPR1	P07272	904 aa	Predicted RBP	4.64	□□□□□ -1.67
FCF1	YDR339C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
FCF1	YDR339C	AAR2	P32357	355 aa	Predicted RBP	4.64	□□□□□ -1.67
FCF1	YDR339C	STE13	P33894	931 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	YEL1	P34225	687 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	ERT1	P38140	529 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	ATF1	P40353	525 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	YKE2	P52553	114 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	YNL193W	P53870	558 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	TMA7	Q3E764	64 aa	Known RBP	4.64	□□□□□ -1.67
FCF1	YDR339C	HBN1	Q96VH4	193 aa		4.64	□□□□□ -1.67
FCF1	YDR339C	SPP41	P38904	1435 aa		4.63	□□□□□ -1.67
FCF1	YDR339C	PWP2	P25635	923 aa	Known RBP	4.63	□□□□□ -1.67
FCF1	YDR339C	YKR078W	P36158	585 aa	Known RBP	4.63	□□□□□ -1.67
FCF1	YDR339C	DSS1	P39112	969 aa		4.63	□□□□□ -1.67
FCF1	YDR339C	SIT1	P39980	628 aa		4.63	□□□□□ -1.67
FCF1	YDR339C	UBP6	P43593	499 aa	Known RBP	4.63	□□□□□ -1.67
FCF1	YDR339C	FOL1	P53848	824 aa		4.63	□□□□□ -1.67
FCF1	YDR339C	UME1	Q03010	460 aa		4.63	□□□□□ -1.67
FCF1	YDR339C	ADE8	P04161	214 aa		4.62	□□□□□ -1.67
FCF1	YDR339C	ATP4	P05626	244 aa		4.62	□□□□□ -1.67
FCF1	YDR339C	HBS1	P32769	611 aa	Known RBP	4.62	□□□□□ -1.67
FCF1	YDR339C	SEC6	P32844	805 aa		4.62	□□□□□ -1.67
FCF1	YDR339C	YRO2	P38079	344 aa		4.62	□□□□□ -1.67
FCF1	YDR339C	YIL108W	P40483	696 aa	Known RBP	4.62	□□□□□ -1.67
FCF1	YDR339C	SDA1	P53313	767 aa	Known RBP	4.62	□□□□□ -1.67
FCF1	YDR339C	THI73	Q07904	523 aa		4.62	□□□□□ -1.67
FCF1	YDR339C	FAP7	Q12055	197 aa	Predicted RBP	4.62	□□□□□ -1.67
FCF1	YDR339C	FBP1	P09201	348 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	KAR1	P11927	433 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	PET10	P36139	283 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	PPS1	P38148	807 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	ALG2	P43636	503 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	MAL11	P53048	616 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	TIM44	Q01852	431 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	HFD1	Q04458	532 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	COG8	Q04632	607 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	TMA17	Q12513	150 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	TY1B-DR4	Q07793	1604 aa		4.61	□□□□□ -1.67
FCF1	YDR339C	VPS24	P36095	224 aa	Known RBP	4.6	□□□□□ -1.67
FCF1	YDR339C	YBR238C	P38330	731 aa	Known RBP	4.6	□□□□□ -1.67
FCF1	YDR339C	SDP1	P40479	209 aa		4.6	□□□□□ -1.67
FCF1	YDR339C	PEX8	P53248	589 aa		4.6	□□□□□ -1.67
FCF1	YDR339C	LCD1	Q04377	747 aa		4.6	□□□□□ -1.67
FCF1	YDR339C	TRE2	Q08693	809 aa		4.6	□□□□□ -1.67
FCF1	YDR339C	FRE5	Q08908	694 aa		4.6	□□□□□ -1.67
FCF1	YDR339C	TUB3	P09734	445 aa	Known RBP	4.59	□□□□□ -1.67
FCF1	YDR339C	TAF2	P23255	1407 aa		4.59	□□□□□ -1.67
FCF1	YDR339C	SEC3	P33332	1336 aa	Known RBP	4.59	□□□□□ -1.67
FCF1	YDR339C	CTF13	P35203	478 aa		4.59	□□□□□ -1.67
FCF1	YDR339C	PMC1	P38929	1173 aa	Predicted RBP	4.59	□□□□□ -1.67
FCF1	YDR339C	CEP3	P40969	608 aa		4.59	□□□□□ -1.67
FCF1	YDR339C	TRM732	Q03496	1420 aa		4.59	□□□□□ -1.67
FCF1	YDR339C	SLX4	Q12098	748 aa		4.59	□□□□□ -1.67
FCF1	YDR339C	MSD1	P15179	658 aa	Known RBP	4.58	□□□□□ -1.68
FCF1	YDR339C	CUE2	P36075	443 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 10.5 ms