RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RPS6KB1P23443 525 aa13.96□□□□□ -0.17
MSH6-204ENST00000445503 TTC14Q96N46 770 aa13.96□□□□□ -0.17
MSH6-204ENST00000445503 TSPOAP1O95153 1857 aa13.96□□□□□ -0.17
MSH6-204ENST00000445503 ANKRD13DQ6ZTN6 518 aa13.96□□□□□ -0.17
MSH6-204ENST00000445503 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.96□□□□□ -0.17
MSH6-204ENST00000445503 V9GYY5 206 aaPredicted RBP13.96□□□□□ -0.17
MSH6-204ENST00000445503 SETD1BQ9UPS6 1966 aaKnown RBP13.96□□□□□ -0.17
MSH6-204ENST00000445503 A0A087WWV3 80 aa13.96□□□□□ -0.18
MSH6-204ENST00000445503 CABP4P57796 275 aa13.96□□□□□ -0.18
MSH6-204ENST00000445503 RALYLQ86SE5 291 aaKnown RBP13.96□□□□□ -0.18
MSH6-204ENST00000445503 ZNF396Q96N95 335 aaPredicted RBP13.96□□□□□ -0.18
MSH6-204ENST00000445503 TMEM131LA2VDJ0 1609 aa13.96□□□□□ -0.18
MSH6-204ENST00000445503 GCP02774 474 aa13.95□□□□□ -0.18
MSH6-204ENST00000445503 POLR3DP05423 398 aaPredicted RBP13.95□□□□□ -0.18
MSH6-204ENST00000445503 FSIP1Q8NA03 581 aa13.95□□□□□ -0.18
MSH6-204ENST00000445503 LEO1Q8WVC0 666 aaPredicted RBP13.95□□□□□ -0.18
MSH6-204ENST00000445503 GIGYF1O75420 1035 aaPredicted RBP13.95□□□□□ -0.18
MSH6-204ENST00000445503 APOBRQ0VD83 1088 aa13.95□□□□□ -0.18
MSH6-204ENST00000445503 NRBP1Q9UHY1 535 aa13.95□□□□□ -0.18
MSH6-204ENST00000445503 NPHP3Q7Z494 1330 aa13.95□□□□□ -0.18
MSH6-204ENST00000445503 DBNDD2Q9BQY9 259 aa13.95□□□□□ -0.18
MSH6-204ENST00000445503 U3KPZ7 1027 aaPredicted RBP13.95□□□□□ -0.18
MSH6-204ENST00000445503 LMBR1LQ6UX01 489 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 ZNF589Q86UQ0 364 aaPredicted RBP13.94□□□□□ -0.18
MSH6-204ENST00000445503 NCOA5Q9HCD5 579 aaKnown RBP13.94□□□□□ -0.18
MSH6-204ENST00000445503 SALL3Q9BXA9 1300 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 NR1I2O75469 434 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 PROSER2Q86WR7 435 aaPredicted RBP13.94□□□□□ -0.18
MSH6-204ENST00000445503 BABAM1Q9NWV8 329 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 RPAP1Q9BWH6 1393 aaPredicted RBP13.94□□□□□ -0.18
MSH6-204ENST00000445503 MYO5BQ9ULV0 1848 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 ATP2B1P20020 1258 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 ANKLE2Q86XL3 938 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 ORAI2Q96SN7 254 aa13.94□□□□□ -0.18
MSH6-204ENST00000445503 TM6SF1Q9BZW5 370 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 NAT10Q9H0A0 1025 aaKnown RBP13.93□□□□□ -0.18
MSH6-204ENST00000445503 DDX21Q9NR30 783 aaKnown RBP eCLIP13.93□□□□□ -0.18
MSH6-204ENST00000445503 CHRNA2Q15822 529 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 CREBRFQ8IUR6 639 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 CEP57L1Q8IYX8 460 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 CCDC94Q9BW85 323 aaPredicted RBP13.93□□□□□ -0.18
MSH6-204ENST00000445503 ZBTB3Q9H5J0 574 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 BCL2L12Q9HB09 334 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 HMG20BQ9P0W2 317 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 SASH1O94885 1247 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 TIMM10P62072 90 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 IFIT1P09914 478 aaKnown RBP13.93□□□□□ -0.18
MSH6-204ENST00000445503 TRDNQ13061 729 aa13.93□□□□□ -0.18
MSH6-204ENST00000445503 PTPN14Q15678 1187 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 HSP90AB3PQ58FF7 597 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 NFXL1Q6ZNB6 911 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 FAM177A1Q8N128 213 aaPredicted RBP13.92□□□□□ -0.18
MSH6-204ENST00000445503 CCAR2Q8N163 923 aaKnown RBP13.92□□□□□ -0.18
MSH6-204ENST00000445503 MAP4K1Q92918 833 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 PREX1Q8TCU6 1659 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 NECTIN1Q15223 517 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 MCMDC2Q4G0Z9 681 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 KIF20BQ96Q89 1820 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 EPB41L2O43491 1005 aaKnown RBP13.92□□□□□ -0.18
MSH6-204ENST00000445503 U2AF2P26368 475 aaKnown RBP eCLIP13.92□□□□□ -0.182e-9■■■■■ 28.4
MSH6-204ENST00000445503 OTUD7BQ6GQQ9 843 aa13.92□□□□□ -0.18
MSH6-204ENST00000445503 CDC42BPGQ6DT37 1551 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 MRVI1Q9Y6F6 885 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 TAF6LQ9Y6J9 622 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 OVOS2A0A0J9YW53 1432 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 OVOS2Q6IE36 1432 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 CHGBP05060 677 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 HOXB7P09629 217 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 TTC39AQ5SRH9 613 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 FTOQ9C0B1 505 aaKnown RBP eCLIP13.91□□□□□ -0.18
MSH6-204ENST00000445503 PDIA4P13667 645 aaKnown RBP13.91□□□□□ -0.18
MSH6-204ENST00000445503 CEP126Q9P2H0 1117 aa13.91□□□□□ -0.18
MSH6-204ENST00000445503 PTPDC1A2A3K4 754 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 SKILP12757 684 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 SLFNL1Q499Z3 407 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 CABLES1Q8TDN4 633 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 USP16Q9Y5T5 823 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 KRT28Q7Z3Y7 464 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 AOPEPQ8N6M6 819 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 TMEM87AQ8NBN3 555 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 ANO10Q9NW15 660 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 CLSTN2Q9H4D0 955 aa13.9□□□□□ -0.18
MSH6-204ENST00000445503 ZNF75DP51815 510 aa13.9□□□□□ -0.19
MSH6-204ENST00000445503 TNNI3KQ59H18 835 aa13.9□□□□□ -0.19
MSH6-204ENST00000445503 PDILTQ8N807 584 aa13.9□□□□□ -0.19
MSH6-204ENST00000445503 SYTL4Q96C24 671 aaPredicted RBP13.9□□□□□ -0.19
MSH6-204ENST00000445503 FPGT-TNNI3KV9GXZ4 949 aa13.9□□□□□ -0.19
MSH6-204ENST00000445503 GCKRQ14397 625 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 STX1AQ16623 288 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 CEP135Q66GS9 1140 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 ZNF790Q6PG37 636 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 KIAA1524Q8TCG1 905 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 C8orf76Q96K31 380 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 CCDC158Q5M9N0 1113 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 CPLX2Q6PUV4 134 aaKnown RBP13.89□□□□□ -0.19
MSH6-204ENST00000445503 ZSCAN16Q9H4T2 348 aaPredicted RBP13.89□□□□□ -0.19
MSH6-204ENST00000445503 DLC1Q96QB1 1528 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 USP31Q70CQ4 1352 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 REREQ9P2R6 1566 aa13.89□□□□□ -0.19
MSH6-204ENST00000445503 TRIM29Q14134 588 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms