RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YBR287WP38355 427 aa6.7□□□□□ -1.34
DEF1YKL054C PGC1Q08959 321 aa6.7□□□□□ -1.34
DEF1YKL054C DPH6Q12429 685 aa6.7□□□□□ -1.34
DEF1YKL054C HMG1P12683 1054 aa6.69□□□□□ -1.34
DEF1YKL054C MRP7P12687 371 aa6.69□□□□□ -1.34
DEF1YKL054C RGP1P16664 663 aa6.69□□□□□ -1.34
DEF1YKL054C PPH3P32345 308 aa6.69□□□□□ -1.34
DEF1YKL054C SHM2P37291 469 aaKnown RBP6.69□□□□□ -1.34
DEF1YKL054C IRC6P43615 237 aa6.69□□□□□ -1.34
DEF1YKL054C YNL058CP53947 316 aa6.69□□□□□ -1.34
DEF1YKL054C SGD1Q06132 899 aa6.69□□□□□ -1.34
DEF1YKL054C RSC3Q06639 885 aa6.69□□□□□ -1.34
DEF1YKL054C PEX15Q08215 383 aa6.69□□□□□ -1.34
DEF1YKL054C CDC19P00549 500 aaKnown RBP6.69□□□□□ -1.34
DEF1YKL054C PHO81P17442 1178 aa6.69□□□□□ -1.34
DEF1YKL054C MIH1P23748 554 aa6.69□□□□□ -1.34
DEF1YKL054C MDJ1P35191 511 aa6.69□□□□□ -1.34
DEF1YKL054C DID4P36108 232 aa6.69□□□□□ -1.34
DEF1YKL054C EMP65P40085 556 aa6.69□□□□□ -1.34
DEF1YKL054C SLD3P53135 668 aa6.69□□□□□ -1.34
DEF1YKL054C YGR250CP53316 781 aaKnown RBP6.69□□□□□ -1.34
DEF1YKL054C UBP2Q01476 1272 aa6.69□□□□□ -1.34
DEF1YKL054C YKU80Q04437 629 aa6.69□□□□□ -1.34
DEF1YKL054C YDR306CQ06640 478 aa6.69□□□□□ -1.34
DEF1YKL054C PAH1P32567 862 aa6.68□□□□□ -1.34
DEF1YKL054C ERT1P38140 529 aa6.68□□□□□ -1.34
DEF1YKL054C OSH7P38755 437 aa6.68□□□□□ -1.34
DEF1YKL054C BFA1P47113 574 aa6.68□□□□□ -1.34
DEF1YKL054C YGR283CP53336 341 aaPredicted RBP6.68□□□□□ -1.34
DEF1YKL054C SKY1Q03656 742 aa6.68□□□□□ -1.34
DEF1YKL054C HOG1P32485 435 aa6.68□□□□□ -1.34
DEF1YKL054C AFG2P32794 780 aa6.68□□□□□ -1.34
DEF1YKL054C YML6P51998 286 aa6.68□□□□□ -1.34
DEF1YKL054C NAM8Q00539 523 aaKnown RBP6.68□□□□□ -1.34
DEF1YKL054C PGA3Q12746 312 aaKnown RBP6.68□□□□□ -1.34
DEF1YKL054C HOP1P20050 605 aa6.67□□□□□ -1.34
DEF1YKL054C EBP2P36049 427 aaKnown RBP6.67□□□□□ -1.34
DEF1YKL054C CCT8P47079 568 aaKnown RBP6.67□□□□□ -1.34
DEF1YKL054C SKP1P52286 194 aa6.67□□□□□ -1.34
DEF1YKL054C ATP25Q03153 612 aa6.67□□□□□ -1.34
DEF1YKL054C TLG1Q03322 224 aa6.67□□□□□ -1.34
DEF1YKL054C YMR018WQ04364 514 aa6.67□□□□□ -1.34
DEF1YKL054C HLR1Q04429 423 aa6.67□□□□□ -1.34
DEF1YKL054C YLR346CQ06139 101 aa6.67□□□□□ -1.34
DEF1YKL054C EST2Q06163 884 aa6.67□□□□□ -1.34
DEF1YKL054C TFC6Q06339 672 aa6.67□□□□□ -1.34
DEF1YKL054C HSP42Q12329 375 aa6.67□□□□□ -1.34
DEF1YKL054C NPL6P32832 435 aa6.66□□□□□ -1.34
DEF1YKL054C RIC1P40395 1056 aa6.66□□□□□ -1.34
DEF1YKL054C TAD1P53065 400 aa6.66□□□□□ -1.34
DEF1YKL054C ARC35P53731 342 aaKnown RBP6.66□□□□□ -1.34
DEF1YKL054C VTI1Q04338 217 aa6.66□□□□□ -1.34
DEF1YKL054C BLS1Q06071 122 aa6.66□□□□□ -1.34
DEF1YKL054C DED1P06634 604 aaKnown RBP6.66□□□□□ -1.34
DEF1YKL054C TY1A-LR4P0C2I8 440 aaKnown RBP6.66□□□□□ -1.34
DEF1YKL054C TY1A-DR6P0CX70 440 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-ER1P0CX71 440 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-LR2P0CX72 440 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-PLP0CX73 440 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-JR1P0CX74 440 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-LR3P0CX75 440 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-ML2P0CX76 440 aa6.66□□□□□ -1.34
DEF1YKL054C DPH2P32461 534 aa6.66□□□□□ -1.34
DEF1YKL054C DPH1P40487 425 aaKnown RBP6.66□□□□□ -1.34
DEF1YKL054C RET2P43621 546 aa6.66□□□□□ -1.34
DEF1YKL054C PCL10P53124 433 aa6.66□□□□□ -1.34
DEF1YKL054C BTN2P53286 410 aa6.66□□□□□ -1.34
DEF1YKL054C RBG2P53295 368 aaKnown RBP6.66□□□□□ -1.34
DEF1YKL054C YLR287CQ05881 355 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-GR1Q12085 440 aa6.66□□□□□ -1.34
DEF1YKL054C TY1A-PR3Q6Q5H1 440 aaKnown RBP6.66□□□□□ -1.34
DEF1YKL054C TY1A-OLQ92392 440 aaKnown RBP6.66□□□□□ -1.34
DEF1YKL054C PDC6P26263 563 aaKnown RBP6.65□□□□□ -1.34
DEF1YKL054C YKU70P32807 602 aa6.65□□□□□ -1.34
DEF1YKL054C UBS1P38290 277 aa6.65□□□□□ -1.34
DEF1YKL054C RRF1P38771 230 aa6.65□□□□□ -1.34
DEF1YKL054C CCT3P39077 534 aaKnown RBP6.65□□□□□ -1.34
DEF1YKL054C TIM10P87108 93 aa6.65□□□□□ -1.34
DEF1YKL054C CUS1Q02554 436 aaPredicted RBP6.65□□□□□ -1.34
DEF1YKL054C GUP2Q08929 609 aa6.65□□□□□ -1.34
DEF1YKL054C HSH49Q99181 213 aaPredicted RBP6.65□□□□□ -1.34
DEF1YKL054C ILS1P09436 1072 aaKnown RBP6.65□□□□□ -1.35
DEF1YKL054C CCR4P31384 837 aaKnown RBP6.65□□□□□ -1.35
DEF1YKL054C AAR2P32357 355 aaPredicted RBP6.65□□□□□ -1.35
DEF1YKL054C YGR153WP48238 217 aa6.65□□□□□ -1.35
DEF1YKL054C SCW11P53189 542 aa6.65□□□□□ -1.35
DEF1YKL054C LCD1Q04377 747 aa6.65□□□□□ -1.35
DEF1YKL054C RRG1Q12167 365 aaPredicted RBP6.65□□□□□ -1.35
DEF1YKL054C SSM4P40318 1319 aa6.64□□□□□ -1.35
DEF1YKL054C RET1P22276 1149 aaKnown RBP6.64□□□□□ -1.35
DEF1YKL054C CMK1P27466 446 aaKnown RBP6.64□□□□□ -1.35
DEF1YKL054C AHP1P38013 176 aaKnown RBP6.64□□□□□ -1.35
DEF1YKL054C MCM7P38132 845 aa6.64□□□□□ -1.35
DEF1YKL054C TOK1P40310 691 aa6.64□□□□□ -1.35
DEF1YKL054C VHR1P40522 640 aa6.64□□□□□ -1.35
DEF1YKL054C RMD8P43620 662 aa6.64□□□□□ -1.35
DEF1YKL054C TEP1P53916 434 aa6.64□□□□□ -1.35
DEF1YKL054C GSF2Q04697 403 aaKnown RBP6.64□□□□□ -1.35
DEF1YKL054C HIM1Q06674 414 aa6.64□□□□□ -1.35
DEF1YKL054C HFI1Q12060 488 aa6.64□□□□□ -1.35
Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms