RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Odf2lQ9D478 642 aa12.77□□□□□ -0.36
Msh3-201ENSMUST00000022220 Foxp4Q9DBY0 795 aaKnown RBP12.77□□□□□ -0.36
Msh3-201ENSMUST00000022220 Disp3A3KFU9 1347 aa12.77□□□□□ -0.36
Msh3-201ENSMUST00000022220 Mdm2P23804 489 aa12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 EspnlQ3UYR4 1005 aa12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 Vps54Q5SPW0 977 aa12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ncoa4Q5U4H9 625 aa12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 AidaQ8C4Q6 305 aa12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 Aldh1l2Q8K009 923 aa12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 Nop14Q8R3N1 860 aaKnown RBP12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 Gm21969J3QJZ1 289 aa12.77□□□□□ -0.37
Msh3-201ENSMUST00000022220 Zcchc11B2RX14 1644 aaKnown RBP12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Pet2A2AHY8 747 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Smarcc1P97496 1104 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Pde4dQ01063 747 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Cfap99A0A140LIX9 648 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Nucb2P81117 420 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Atp2b3Q0VF55 1220 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Tmem87bQ8BKU8 555 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Lmod1Q8BVA4 595 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Cadps2Q8BYR5 1297 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Erc1Q99MI1 1120 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Irx4Q9QY61 515 aa12.76□□□□□ -0.37
Msh3-201ENSMUST00000022220 Tpm3-rs7D3Z2H9 248 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Tgfb1i1Q62219 461 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 4930504O13RikQ8C5Z9 145 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Sh3bp1P55194 680 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Fsd2Q8BZ52 692 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Gm45140A0A0N4SUM8 220 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ppfia1B2RXQ2 1266 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Adora1Q60612 326 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Lmbrd2Q8C561 694 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Abca9Q8K449 1623 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Neurl4Q5NCX5 1563 aa12.75□□□□□ -0.37
Msh3-201ENSMUST00000022220 Kif24Q6NWW5 1356 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Dctn1O08788 1281 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Cfap69Q8BH53 942 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Rbm8a2A0A0N4SUH6 174 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Cyp2d12Q8BVD2 504 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ift57Q8BXG3 429 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ppp6r3Q922D4 844 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Rbm8aQ9CWZ3 174 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Calcoco2A2A6M5 331 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Cnksr1A2A9K7 700 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Rbm19Q8R3C6 952 aaKnown RBP12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Med4Q9CQA5 270 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Mlh1Q9JK91 760 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 PdcQ9QW08 244 aa12.74□□□□□ -0.37
Msh3-201ENSMUST00000022220 Gm45015A0A140LII9 184 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Gm18336A0A140LIU8 765 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Dync1i1O88485 628 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Bach1P97302 739 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Bsdc1Q80Y55 427 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 NaspQ99MD9 773 aaKnown RBP12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Fam213aQ9CYH2 218 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Hmgn5Q9JL35 406 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Iqgap3F8VQ29 1632 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Cfap73J3QPZ5 306 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Prl7d1P04769 244 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ncbp1Q3UYV9 790 aaKnown RBP12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Rec8Q8C5S7 591 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Naa30Q8CES0 364 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Tm6sf1P58749 370 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 Snx13Q6PHS6 957 aa12.73□□□□□ -0.37
Msh3-201ENSMUST00000022220 CpvlQ9D3S9 478 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 RereQ80TZ9 1558 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Anp32eP97822 260 aaKnown RBP12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Zc3h12cQ5DTV4 884 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Pram1Q6BCL1 675 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Larp6Q8BN59 492 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Iqgap1Q9JKF1 1657 aaKnown RBP12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Clasp1Q80TV8 1535 aaKnown RBP12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Zkscan16A2ALW2 728 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Atf5O70191 283 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Nxf2Q4ZGD8 691 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ccdc66Q6NS45 935 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Hook1Q8BIL5 728 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Tbc1d8Q9Z1A9 1134 aa12.72□□□□□ -0.37
Msh3-201ENSMUST00000022220 Dnai2A2AC93 623 aa12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 Krt25Q8VCW2 446 aa12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 Gtpbp4Q99ME9 634 aaKnown RBP12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 NsmfQ99NF2 532 aa12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 Tns3Q5SSZ5 1440 aa12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ehmt1Q5DW34 1296 aa12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 Ccdc178Q8CDV0 866 aa12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 Dnajc14Q921R4 703 aa12.71□□□□□ -0.37
Msh3-201ENSMUST00000022220 Zkscan7E9PVW1 718 aa12.71□□□□□ -0.38
Msh3-201ENSMUST00000022220 Stac3Q8BZ71 360 aa12.71□□□□□ -0.38
Msh3-201ENSMUST00000022220 Znf428Q8C1M2 176 aa12.71□□□□□ -0.38
Msh3-201ENSMUST00000022220 Tmem143Q8VD26 458 aa12.71□□□□□ -0.38
Msh3-201ENSMUST00000022220 Cap2Q9CYT6 476 aa12.71□□□□□ -0.38
Msh3-201ENSMUST00000022220 Casp1P29452 402 aa12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 Ankrd13dQ6PD24 605 aa12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 Nup88Q8CEC0 753 aaKnown RBP12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 Kiaa1210E9Q0C6 1637 aa12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 Cep152A2AUM9 1736 aaKnown RBP12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 CoilQ5SU73 570 aa12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 Stk38Q91VJ4 465 aa12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 NapbP28663 298 aa12.7□□□□□ -0.38
Msh3-201ENSMUST00000022220 Bend3Q6PAL0 825 aa12.7□□□□□ -0.38
Retrieved 100 of 22,080 RNA–protein pairs in 23 ms