RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C CDC34P14682 295 aa2.62□□□□□ -1.99
VPS54YDR027C HEM3P28789 327 aa2.62□□□□□ -1.99
VPS54YDR027C ASF1P32447 279 aa2.62□□□□□ -1.99
VPS54YDR027C ATG19P35193 415 aa2.62□□□□□ -1.99
VPS54YDR027C SAH1P39954 449 aaKnown RBP2.62□□□□□ -1.99
VPS54YDR027C EFT1P32324 842 aaKnown RBP2.61□□□□□ -1.99
VPS54YDR027C YKL151CP36059 337 aa2.61□□□□□ -1.99
VPS54YDR027C CAD1P24813 409 aaKnown RBP2.61□□□□□ -1.99
VPS54YDR027C GIC1P38785 314 aa2.61□□□□□ -1.99
VPS54YDR027C OYE2Q03558 400 aaKnown RBP2.61□□□□□ -1.99
VPS54YDR027C YLR225CQ05948 407 aaKnown RBP2.61□□□□□ -1.99
VPS54YDR027C PIN4P34217 668 aaKnown RBP RIP-Chip data2.6□□□□□ -1.99not detected
VPS54YDR027C SUL1P38359 859 aa2.6□□□□□ -1.99
VPS54YDR027C MET10P39692 1035 aa2.6□□□□□ -1.99
VPS54YDR027C URM1P40554 99 aaPredicted RBP2.6□□□□□ -1.99
VPS54YDR027C NCS6P53088 359 aa2.6□□□□□ -1.99
VPS54YDR027C GUP2Q08929 609 aa2.6□□□□□ -1.99
VPS54YDR027C KAR4P25583 335 aa2.6□□□□□ -1.99
VPS54YDR027C KRI1P42846 591 aaKnown RBP2.6□□□□□ -1.99
VPS54YDR027C STU2P46675 888 aa2.6□□□□□ -1.99
VPS54YDR027C SRP1Q02821 542 aaKnown RBP2.6□□□□□ -1.99
VPS54YDR027C YOL073CQ08232 322 aa2.6□□□□□ -1.99
VPS54YDR027C MNR2P35724 969 aa2.59□□□□□ -1.99
VPS54YDR027C KTR4P38131 464 aa2.59□□□□□ -1.99
VPS54YDR027C WHI4Q07655 649 aaKnown RBP2.59□□□□□ -1.99
VPS54YDR027C YLR040CQ07988 224 aa2.59□□□□□ -1.99
VPS54YDR027C RPC82P32349 654 aa2.59□□□□□ -2
VPS54YDR027C LAS17Q12446 633 aa2.59□□□□□ -2
VPS54YDR027C YPR196WQ06595 470 aa2.58□□□□□ -2
VPS54YDR027C YML020WQ03722 664 aa2.58□□□□□ -2
VPS54YDR027C MCH5Q08777 521 aa2.58□□□□□ -2
VPS54YDR027C ERG4P25340 473 aa2.57□□□□□ -2
VPS54YDR027C SED4P25365 1065 aa2.57□□□□□ -2
VPS54YDR027C SFB2P53953 876 aa2.57□□□□□ -2
VPS54YDR027C TIM44Q01852 431 aa2.57□□□□□ -2
VPS54YDR027C TY1B-DR4Q07793 1604 aa2.57□□□□□ -2
VPS54YDR027C REV3P14284 1504 aa2.57□□□□□ -2
VPS54YDR027C CDC12P32468 407 aaKnown RBP2.57□□□□□ -2
VPS54YDR027C ABD1P32783 436 aaPredicted RBP2.57□□□□□ -2
VPS54YDR027C BUL1P48524 976 aa2.57□□□□□ -2
VPS54YDR027C OMS1Q06668 471 aa2.57□□□□□ -2
VPS54YDR027C NPP2P39997 493 aa2.56□□□□□ -2
VPS54YDR027C YER158CP40095 573 aa2.56□□□□□ -2
VPS54YDR027C RAI1P53063 387 aaKnown RBP2.56□□□□□ -2
VPS54YDR027C DUS3Q06053 668 aaKnown RBP2.56□□□□□ -2
VPS54YDR027C ESC2Q06340 456 aa2.56□□□□□ -2
VPS54YDR027C UPC2Q12151 913 aa2.56□□□□□ -2
VPS54YDR027C ACF2Q12168 779 aa2.56□□□□□ -2
VPS54YDR027C TRP4P07285 380 aaPredicted RBP2.56□□□□□ -2
VPS54YDR027C GYP7P48365 746 aa2.56□□□□□ -2
VPS54YDR027C NPL3Q01560 414 aaKnown RBP RIP-Chip data2.56□□□□□ -2not detected
VPS54YDR027C RNT1Q02555 471 aa2.56□□□□□ -2
VPS54YDR027C YMR206WQ03695 313 aa2.56□□□□□ -2
VPS54YDR027C TMN2Q04562 672 aa2.56□□□□□ -2
VPS54YDR027C STB4P50104 949 aa2.55□□□□□ -2
VPS54YDR027C YGR053CP53234 283 aa2.55□□□□□ -2
VPS54YDR027C MBP1P39678 833 aa2.55□□□□□ -2
VPS54YDR027C FAA4P47912 694 aaKnown RBP2.55□□□□□ -2
VPS54YDR027C GDE1Q02979 1223 aa2.55□□□□□ -2
VPS54YDR027C SBA1P28707 216 aaKnown RBP2.55□□□□□ -2
VPS54YDR027C ATF1P40353 525 aa2.55□□□□□ -2
VPS54YDR027C QRI1P43123 477 aaKnown RBP2.55□□□□□ -2
VPS54YDR027C IRC10Q08118 586 aa2.55□□□□□ -2
VPS54YDR027C FAL1Q12099 399 aaKnown RBP2.55□□□□□ -2
VPS54YDR027C PPH3P32345 308 aa2.54□□□□□ -2
VPS54YDR027C YKR078WP36158 585 aaKnown RBP2.54□□□□□ -2
VPS54YDR027C VPS30Q02948 557 aa2.54□□□□□ -2
VPS54YDR027C NOP8Q08287 484 aaPredicted RBP2.54□□□□□ -2
VPS54YDR027C NOT3P06102 836 aaKnown RBP2.54□□□□□ -2
VPS54YDR027C PPR1P07272 904 aaPredicted RBP2.54□□□□□ -2
VPS54YDR027C ALG7P07286 448 aa2.54□□□□□ -2
VPS54YDR027C AGP1P25376 633 aa2.54□□□□□ -2
VPS54YDR027C CDC48P25694 835 aaKnown RBP2.54□□□□□ -2
VPS54YDR027C STE14P32584 239 aa2.54□□□□□ -2
VPS54YDR027C CLN2P20438 545 aa2.53□□□□□ -2
VPS54YDR027C CWC24P53769 259 aa2.53□□□□□ -2
VPS54YDR027C YDR306CQ06640 478 aa2.53□□□□□ -2
VPS54YDR027C TCB3Q03640 1545 aaKnown RBP2.53□□□□□ -2
VPS54YDR027C TSL1P38427 1098 aaKnown RBP2.53□□□□□ -2.01
VPS54YDR027C PEX19Q07418 342 aa2.53□□□□□ -2.01
VPS54YDR027C BDF2Q07442 638 aa2.53□□□□□ -2.01
VPS54YDR027C GUS1P46655 708 aaKnown RBP RIP-Chip data2.52□□□□□ -2.01not detected
VPS54YDR027C LGE1Q02796 332 aaKnown RBP2.52□□□□□ -2.01
VPS54YDR027C MUK1Q02866 612 aa2.52□□□□□ -2.01
VPS54YDR027C STE13P33894 931 aa2.52□□□□□ -2.01
VPS54YDR027C CUE2P36075 443 aaKnown RBP2.52□□□□□ -2.01
VPS54YDR027C ADE8P04161 214 aa2.51□□□□□ -2.01
VPS54YDR027C MET3P08536 511 aa2.51□□□□□ -2.01
VPS54YDR027C NAP1P25293 417 aaKnown RBP2.51□□□□□ -2.01
VPS54YDR027C AAR2P32357 355 aaPredicted RBP2.51□□□□□ -2.01
VPS54YDR027C MTH1P35198 433 aa2.51□□□□□ -2.01
VPS54YDR027C SPC42P36094 363 aa2.51□□□□□ -2.01
VPS54YDR027C MAD1P40957 749 aa2.51□□□□□ -2.01
VPS54YDR027C TPO2P53283 614 aa2.51□□□□□ -2.01
VPS54YDR027C GND2P53319 492 aa2.51□□□□□ -2.01
VPS54YDR027C ECM5Q03214 1411 aa2.51□□□□□ -2.01
VPS54YDR027C HBT1Q07653 1046 aaKnown RBP2.51□□□□□ -2.01
VPS54YDR027C TRM13Q12383 476 aa2.51□□□□□ -2.01
VPS54YDR027C SEC21P32074 935 aaKnown RBP2.51□□□□□ -2.01
VPS54YDR027C VBA5P36172 582 aa2.51□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms