RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 LAMA4Q16363 1823 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 F5H5P2 479 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 TSTD3H0UI37 97 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 IFNA2P01563 188 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 BCKDHAP12694 445 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 PRKXP51817 358 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 EN1Q05925 392 aaPredicted RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 SDHAF4Q5VUM1 108 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 OR56A1Q8NGH5 318 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 OR5AK3PQ8NH89 298 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 FAM110BQ8TC76 370 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 ZNF416Q9BWM5 594 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 REEP4Q9H6H4 257 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 FANCFQ9NPI8 374 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 NDOR1Q9UHB4 597 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 GPSM3Q9Y4H4 160 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 FARS2O95363 451 aaKnown RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 VNN2O95498 520 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 PROS1P07225 676 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 CSNK2A2P19784 350 aaPredicted RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 CAPN3P20807 821 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 TNFSF8P32971 234 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 MLLT3P42568 568 aaPredicted RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 BTN1A1Q13410 526 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 LIPJQ5W064 366 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 CLEC20AQ6ZU45 233 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 RD3Q7Z3Z2 195 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 PNLDC1Q8NA58 520 aaKnown RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 MRI1Q9BV20 369 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 EIF5A2Q9GZV4 153 aaKnown RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 PCDHGA8Q9Y5G5 932 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 COL5A2P05997 1499 aaPredicted RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 POP4O95707 220 aaKnown RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 HSD3B1P14060 373 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 HSD3B2P26439 372 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 CASP9P55211 416 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 CLDN8P56748 225 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 SLBPQ14493 270 aaKnown RBP eCLIP8.58□□□□□ -1.04
VCL-206ENST00000623461 PLAG1Q6DJT9 500 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 THOC6Q86W42 341 aaKnown RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 OR6K2Q8NGY2 324 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 SOCS4Q8WXH5 440 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 MOAP1Q96BY2 351 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 SHISA4Q96DD7 197 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 NECAB3Q96P71 396 aaPredicted RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 CTPS2Q9NRF8 586 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 SLC27A5Q9Y2P5 690 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 OARD1Q9Y530 152 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 DNAJC15Q9Y5T4 150 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 SSX5O60225 188 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 CYB5AP00167 134 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 ZNF20P17024 532 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 GPX3P22352 226 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 GGT2P36268 569 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 TRIM23P36406 574 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 MAGEA6P43360 314 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 SF1Q15637 639 aaKnown RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 FAM117BQ6P1L5 589 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 SVBPQ8N300 66 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 C3orf58Q8NDZ4 430 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 NPY6RQ99463 290 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 CCM2Q9BSQ5 444 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 OR10A4Q9H209 315 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 BCAS3Q9H6U6 928 aa8.58□□□□□ -1.04
VCL-206ENST00000623461 TEX10Q9NXF1 929 aaPredicted RBP8.58□□□□□ -1.04
VCL-206ENST00000623461 IL1AP01583 271 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 BRCC3P46736 316 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 SF3B4Q15427 424 aaKnown RBP eCLIP8.57□□□□□ -1.047e-7■■■■□ 26.7
VCL-206ENST00000623461 TATDN3Q17R31 274 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 SYT14Q8NB59 555 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 ACBD4Q8NC06 268 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 OR8D1Q8WZ84 308 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 FEVQ99581 238 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 SYT4Q9H2B2 425 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 A0A1W2PQ09 198 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 CELF2O95319 508 aaKnown RBP8.57□□□□□ -1.04
VCL-206ENST00000623461 C6orf47O95873 294 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 CH25HO95992 272 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 DPP6P42658 865 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 ACTA2P62736 377 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 ACTG2P63267 376 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 ATXN7L3Q14CW9 347 aaPredicted RBP8.57□□□□□ -1.04
VCL-206ENST00000623461 NOXRED1Q6NXP6 359 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 ARL14Q8N4G2 192 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 NUP98P52948 1817 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 SOX30O94993 753 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 DBIP07108 87 aaKnown RBP8.57□□□□□ -1.04
VCL-206ENST00000623461 UBBP0CG47 229 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 UBCP0CG48 685 aaKnown RBP8.57□□□□□ -1.04
VCL-206ENST00000623461 RPS27AP62979 156 aaKnown RBP8.57□□□□□ -1.04
VCL-206ENST00000623461 UBA52P62987 128 aaKnown RBP8.57□□□□□ -1.04
VCL-206ENST00000623461 CXCL9Q07325 125 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 OXA1LQ15070 435 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 LYSMD3Q7Z3D4 306 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 GPC2Q8N158 579 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 OR2T33Q8NG76 320 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 OR51E2Q9H255 320 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 GOLGA2P5Q9HBQ8 144 aa8.57□□□□□ -1.04
VCL-206ENST00000623461 CD8B2A6NJW9 211 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms