RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C HDA2Q06629 674 aa6.93□□□□□ -1.3
DEF1YKL054C TOP3P13099 656 aa6.92□□□□□ -1.3
DEF1YKL054C UGA3P26370 528 aa6.92□□□□□ -1.3
DEF1YKL054C MCM10P32354 571 aa6.92□□□□□ -1.3
DEF1YKL054C HBS1P32769 611 aaKnown RBP6.92□□□□□ -1.3
DEF1YKL054C CCC2P38995 1004 aa6.92□□□□□ -1.3
DEF1YKL054C GPP2P40106 250 aaKnown RBP6.92□□□□□ -1.3
DEF1YKL054C MNT3P40549 630 aa6.92□□□□□ -1.3
DEF1YKL054C UBA2P52488 636 aa6.92□□□□□ -1.3
DEF1YKL054C HFD1Q04458 532 aa6.92□□□□□ -1.3
DEF1YKL054C YDR056CQ12025 205 aa6.92□□□□□ -1.3
DEF1YKL054C HBN1Q96VH4 193 aa6.92□□□□□ -1.3
DEF1YKL054C HOM3P10869 527 aa6.92□□□□□ -1.3
DEF1YKL054C GFD2P25370 566 aaKnown RBP6.92□□□□□ -1.3
DEF1YKL054C LYP1P32487 611 aa6.92□□□□□ -1.3
DEF1YKL054C UTR2P32623 467 aa6.92□□□□□ -1.3
DEF1YKL054C TFC3P34111 1160 aa6.92□□□□□ -1.3
DEF1YKL054C KTR4P38131 464 aa6.92□□□□□ -1.3
DEF1YKL054C TAF1P46677 1066 aa6.92□□□□□ -1.3
DEF1YKL054C MTR4P47047 1073 aaKnown RBP6.92□□□□□ -1.3
DEF1YKL054C MSH6Q03834 1242 aa6.92□□□□□ -1.3
DEF1YKL054C NIC96P34077 839 aa6.91□□□□□ -1.3
DEF1YKL054C JNM1P36224 373 aa6.91□□□□□ -1.3
DEF1YKL054C PES4P39684 611 aa6.91□□□□□ -1.3
DEF1YKL054C MON1P53129 644 aa6.91□□□□□ -1.3
DEF1YKL054C MED1Q12321 566 aa6.91□□□□□ -1.3
DEF1YKL054C SEC23P15303 768 aaKnown RBP6.91□□□□□ -1.3
DEF1YKL054C LDH1P38139 375 aa6.91□□□□□ -1.3
DEF1YKL054C SAP155P43612 1002 aa6.91□□□□□ -1.3
DEF1YKL054C MLC2Q06580 163 aa6.91□□□□□ -1.3
DEF1YKL054C PRP5P21372 849 aaPredicted RBP6.9□□□□□ -1.3
DEF1YKL054C NIT2P47016 307 aa6.9□□□□□ -1.3
DEF1YKL054C PTK2P47116 818 aaKnown RBP6.9□□□□□ -1.3
DEF1YKL054C RSC1P53236 928 aa6.9□□□□□ -1.3
DEF1YKL054C SXM1Q04175 944 aaKnown RBP6.9□□□□□ -1.3
DEF1YKL054C YDL124WQ07551 312 aaKnown RBP6.9□□□□□ -1.3
DEF1YKL054C SAP185P40856 1058 aa6.89□□□□□ -1.31
DEF1YKL054C YGL140CP53120 1219 aa6.89□□□□□ -1.31
DEF1YKL054C SNP1Q00916 300 aaPredicted RBP6.89□□□□□ -1.31
DEF1YKL054C HEH2Q03281 663 aa6.89□□□□□ -1.31
DEF1YKL054C SDH5Q08230 162 aa6.89□□□□□ -1.31
DEF1YKL054C WTM2Q12206 467 aa6.89□□□□□ -1.31
DEF1YKL054C KCC4P25389 1037 aa6.89□□□□□ -1.31
DEF1YKL054C VBA3P25594 458 aa6.89□□□□□ -1.31
DEF1YKL054C PCL2P25693 308 aa6.89□□□□□ -1.31
DEF1YKL054C URA1P28272 314 aaPredicted RBP6.89□□□□□ -1.31
DEF1YKL054C AAD14P42884 376 aa6.89□□□□□ -1.31
DEF1YKL054C DUG1P43616 481 aaKnown RBP6.89□□□□□ -1.31
DEF1YKL054C MET13P53128 600 aa6.89□□□□□ -1.31
DEF1YKL054C NPY1P53164 384 aa6.89□□□□□ -1.31
DEF1YKL054C YNL165WP53891 406 aa6.89□□□□□ -1.31
DEF1YKL054C BUL2Q03758 920 aaKnown RBP6.89□□□□□ -1.31
DEF1YKL054C UTP4Q06679 776 aaKnown RBP6.89□□□□□ -1.31
DEF1YKL054C PSR1Q07800 427 aa6.89□□□□□ -1.31
DEF1YKL054C YPL066WQ12194 479 aa6.89□□□□□ -1.31
DEF1YKL054C MSS18P08593 268 aa6.88□□□□□ -1.31
DEF1YKL054C IRC3Q06683 689 aa6.88□□□□□ -1.31
DEF1YKL054C ECM32P32644 1121 aaKnown RBP6.88□□□□□ -1.31
DEF1YKL054C RVS167P39743 482 aaKnown RBP6.88□□□□□ -1.31
DEF1YKL054C HOL1P53389 586 aa6.88□□□□□ -1.31
DEF1YKL054C SIW14P53965 281 aa6.88□□□□□ -1.31
DEF1YKL054C PRP9P19736 530 aaKnown RBP6.87□□□□□ -1.31
DEF1YKL054C NAB2P32505 525 aaKnown RBP RIP-Chip data6.87□□□□□ -1.31not detected
DEF1YKL054C LCB5Q06147 687 aaKnown RBP6.87□□□□□ -1.31
DEF1YKL054C TSR2Q06672 205 aaKnown RBP6.87□□□□□ -1.31
DEF1YKL054C RDH54P38086 958 aa6.86□□□□□ -1.31
DEF1YKL054C RIM4P38741 713 aa6.86□□□□□ -1.31
DEF1YKL054C DYS1P38791 387 aa6.86□□□□□ -1.31
DEF1YKL054C APE4P38821 490 aa6.86□□□□□ -1.31
DEF1YKL054C MBP1P39678 833 aa6.86□□□□□ -1.31
DEF1YKL054C ACA1P39970 489 aa6.86□□□□□ -1.31
DEF1YKL054C TRS130Q03660 1102 aa6.86□□□□□ -1.31
DEF1YKL054C CIA1Q05583 330 aa6.86□□□□□ -1.31
DEF1YKL054C NEW1Q08972 1196 aaKnown RBP6.86□□□□□ -1.31
DEF1YKL054C DAT1P13483 248 aaKnown RBP6.86□□□□□ -1.31
DEF1YKL054C DSS1P39112 969 aa6.86□□□□□ -1.31
DEF1YKL054C HIS6P40545 261 aa6.86□□□□□ -1.31
DEF1YKL054C YJR096WP47137 282 aa6.86□□□□□ -1.31
DEF1YKL054C NOG1Q02892 647 aaKnown RBP6.86□□□□□ -1.31
DEF1YKL054C QDR2P40474 542 aa6.85□□□□□ -1.31
DEF1YKL054C BRE2P43132 505 aa6.85□□□□□ -1.31
DEF1YKL054C CDC9P04819 755 aa6.85□□□□□ -1.31
DEF1YKL054C SRD1P09007 221 aa6.85□□□□□ -1.31
DEF1YKL054C MOT2P34909 587 aaKnown RBP6.85□□□□□ -1.31
DEF1YKL054C YKL133CP36066 463 aa6.85□□□□□ -1.31
DEF1YKL054C PEX28P38848 579 aa6.85□□□□□ -1.31
DEF1YKL054C FIR1P40020 876 aa6.85□□□□□ -1.31
DEF1YKL054C PAP2P53632 584 aaKnown RBP6.85□□□□□ -1.31
DEF1YKL054C CHS3P29465 1165 aa6.84□□□□□ -1.31
DEF1YKL054C DAL3P32459 195 aa6.84□□□□□ -1.31
DEF1YKL054C OAF1P39720 1047 aaPredicted RBP6.84□□□□□ -1.31
DEF1YKL054C ERR3P42222 437 aa6.84□□□□□ -1.31
DEF1YKL054C VTC2P43585 828 aa6.84□□□□□ -1.31
DEF1YKL054C UBP6P43593 499 aaKnown RBP6.84□□□□□ -1.31
DEF1YKL054C MEP3P53390 489 aa6.84□□□□□ -1.31
DEF1YKL054C GRX3Q03835 250 aa6.84□□□□□ -1.31
DEF1YKL054C IMH1Q06704 911 aaKnown RBP6.84□□□□□ -1.31
DEF1YKL054C CLF1Q12309 687 aaPredicted RBP6.84□□□□□ -1.31
DEF1YKL054C ARG82P07250 355 aa6.84□□□□□ -1.32
DEF1YKL054C AEP2P22136 580 aa6.84□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms