RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC4	YFL005W	EEB1	Q02891	456 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	EST2	Q06163	884 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	OPI10	Q08202	246 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	YOL098C	Q12496	1037 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	DED1	P06634	604 aa	Known RBP	4.76	□□□□□ -1.65
SEC4	YFL005W	ATG14	P38270	344 aa		4.76	□□□□□ -1.65
SEC4	YFL005W	KRI1	P42846	591 aa	Known RBP	4.76	□□□□□ -1.65
SEC4	YFL005W	YNR063W	P53749	607 aa		4.76	□□□□□ -1.65
SEC4	YFL005W	ROD1	Q02805	837 aa		4.76	□□□□□ -1.65
SEC4	YFL005W	RKM2	Q03942	479 aa		4.76	□□□□□ -1.65
SEC4	YFL005W	LYP1	P32487	611 aa		4.75	□□□□□ -1.65
SEC4	YFL005W	AFG2	P32794	780 aa		4.75	□□□□□ -1.65
SEC4	YFL005W	SMY2	P32909	740 aa	Known RBP	4.75	□□□□□ -1.65
SEC4	YFL005W	RER2	P35196	286 aa		4.75	□□□□□ -1.65
SEC4	YFL005W	PTC7	P38797	343 aa		4.75	□□□□□ -1.65
SEC4	YFL005W	NMD3	P38861	518 aa	Known RBP	4.75	□□□□□ -1.65
SEC4	YFL005W	TYW3	P53177	273 aa		4.75	□□□□□ -1.65
SEC4	YFL005W	FAL1	Q12099	399 aa	Known RBP	4.75	□□□□□ -1.65
SEC4	YFL005W	SOD2	P00447	233 aa		4.74	□□□□□ -1.65
SEC4	YFL005W	PRI2	P20457	528 aa		4.74	□□□□□ -1.65
SEC4	YFL005W	GRX1	P25373	110 aa	Known RBP	4.74	□□□□□ -1.65
SEC4	YFL005W	MKK2	P32491	506 aa		4.74	□□□□□ -1.65
SEC4	YFL005W	NNK1	P36003	928 aa		4.74	□□□□□ -1.65
SEC4	YFL005W	YAR028W	P39548	234 aa		4.74	□□□□□ -1.65
SEC4	YFL005W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.74	□□□□□ -1.65	not detected
SEC4	YFL005W	AVO1	Q08236	1176 aa		4.74	□□□□□ -1.65
SEC4	YFL005W	TRP2	P00899	507 aa	Known RBP	4.73	□□□□□ -1.65
SEC4	YFL005W	BAS1	P22035	811 aa		4.73	□□□□□ -1.65
SEC4	YFL005W	SYP1	P25623	870 aa	Known RBP	4.73	□□□□□ -1.65
SEC4	YFL005W	SPF1	P39986	1215 aa	Known RBP	4.73	□□□□□ -1.65
SEC4	YFL005W	RAT1	Q02792	1006 aa	Known RBP	4.73	□□□□□ -1.65
SEC4	YFL005W	SPO20	Q04359	397 aa		4.73	□□□□□ -1.65
SEC4	YFL005W	FPR4	Q06205	392 aa	Predicted RBP	4.73	□□□□□ -1.65
SEC4	YFL005W	TDA5	Q06417	326 aa	Known RBP	4.73	□□□□□ -1.65
SEC4	YFL005W	LAP2	Q10740	671 aa		4.73	□□□□□ -1.65
SEC4	YFL005W	YDL177C	Q12257	170 aa		4.73	□□□□□ -1.65
SEC4	YFL005W	AGP1	P25376	633 aa		4.72	□□□□□ -1.65
SEC4	YFL005W	SRP40	P32583	406 aa	Predicted RBP	4.72	□□□□□ -1.65
SEC4	YFL005W	GTS1	P40956	396 aa		4.72	□□□□□ -1.65
SEC4	YFL005W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	not detected
SEC4	YFL005W	DBP5	P20449	482 aa	Known RBP	4.71	□□□□□ -1.66
SEC4	YFL005W	TOD6	P34219	525 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	YKL069W	P36088	180 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	ABZ1	P37254	787 aa	Predicted RBP	4.71	□□□□□ -1.66
SEC4	YFL005W	HSE1	P38753	452 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	TAT2	P38967	592 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	IOC3	P43596	787 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	CNN1	P43618	361 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	NAN1	Q02931	896 aa	Known RBP	4.71	□□□□□ -1.66
SEC4	YFL005W	TIF35	Q04067	274 aa	Known RBP	4.71	□□□□□ -1.66
SEC4	YFL005W	NSE3	Q05541	303 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	RSA3	Q05942	220 aa	Known RBP	4.71	□□□□□ -1.66
SEC4	YFL005W	YLR257W	Q06146	321 aa	Known RBP	4.71	□□□□□ -1.66
SEC4	YFL005W	YPL277C	Q08989	487 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	TAD3	Q9URQ3	322 aa		4.71	□□□□□ -1.66
SEC4	YFL005W	RET1	P22276	1149 aa	Known RBP	4.7	□□□□□ -1.66
SEC4	YFL005W	SBA1	P28707	216 aa	Known RBP	4.7	□□□□□ -1.66
SEC4	YFL005W	ETP1	P38748	585 aa	Known RBP	4.7	□□□□□ -1.66
SEC4	YFL005W	VPS53	P47061	822 aa		4.7	□□□□□ -1.66
SEC4	YFL005W	SHE9	Q04172	456 aa		4.7	□□□□□ -1.66
SEC4	YFL005W	YLR225C	Q05948	407 aa	Known RBP	4.7	□□□□□ -1.66
SEC4	YFL005W	MRP8	P35719	219 aa		4.69	□□□□□ -1.66
SEC4	YFL005W	ALG3	P38179	458 aa		4.69	□□□□□ -1.66
SEC4	YFL005W	RGD1	P38339	666 aa		4.69	□□□□□ -1.66
SEC4	YFL005W	SNF7	P39929	240 aa	Known RBP	4.69	□□□□□ -1.66
SEC4	YFL005W	RKM4	Q12504	494 aa		4.69	□□□□□ -1.66
SEC4	YFL005W	PTC5	Q12511	572 aa		4.69	□□□□□ -1.66
SEC4	YFL005W	YLR358C	O13565	187 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	RPS13	P05756	151 aa	Known RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	INO1	P11986	533 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	RAD4	P14736	754 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	ABD1	P32783	436 aa	Predicted RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	YKL091C	P33324	310 aa	Known RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.68	□□□□□ -1.66	not detected
SEC4	YFL005W	VBA5	P36172	582 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	QNS1	P38795	714 aa	Known RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	GPB2	P39717	880 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	MPH1	P40562	993 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	YJL045W	P47052	634 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	HNT2	P49775	206 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	FOL2	P51601	243 aa	Known RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	SNO2	P53823	222 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	CLU1	Q03690	1277 aa	Known RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	TPP1	Q03796	238 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	BDF2	Q07442	638 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	PUS7	Q08647	676 aa	Known RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	CDC53	Q12018	815 aa	Known RBP	4.68	□□□□□ -1.66
SEC4	YFL005W	YOR131C	Q12486	218 aa		4.68	□□□□□ -1.66
SEC4	YFL005W	MOT2	P34909	587 aa	Known RBP	4.67	□□□□□ -1.66
SEC4	YFL005W	MCM7	P38132	845 aa		4.67	□□□□□ -1.66
SEC4	YFL005W	YBR184W	P38299	523 aa		4.67	□□□□□ -1.66
SEC4	YFL005W	IRR1	P40541	1150 aa		4.67	□□□□□ -1.66
SEC4	YFL005W	OSW7	P43611	510 aa		4.67	□□□□□ -1.66
SEC4	YFL005W	RPN4	Q03465	531 aa		4.67	□□□□□ -1.66
SEC4	YFL005W	ESC2	Q06340	456 aa		4.67	□□□□□ -1.66
SEC4	YFL005W	SPO75	Q07798	868 aa		4.67	□□□□□ -1.66
SEC4	YFL005W	TUB2	P02557	457 aa	Known RBP	4.66	□□□□□ -1.66
SEC4	YFL005W	KIP1	P28742	1111 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	MLS1	P30952	554 aa		4.66	□□□□□ -1.66
SEC4	YFL005W	STE5	P32917	917 aa		4.66	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms