Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 DUX4L26-201ENST00000489078 1255 ntBASIC18.17■□□□□ 0.5
VPS4AQ9UN37 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 BCL2-203ENST00000589955 5011 ntBASIC18.17■□□□□ 0.5
VPS4AQ9UN37 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4AQ9UN37 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 LIN28AP1-201ENST00000429574 405 ntBASIC18.16■□□□□ 0.5
VPS4AQ9UN37 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4AQ9UN37 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 FP475955.4-201ENST00000623131 1990 ntBASIC18.15■□□□□ 0.5
VPS4AQ9UN37 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 SLC25A3P1-201ENST00000443844 931 ntBASIC18.15■□□□□ 0.5
VPS4AQ9UN37 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 AC090340.1-201ENST00000620778 4980 ntBASIC18.15■□□□□ 0.5
VPS4AQ9UN37 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4AQ9UN37 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms