Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 AC024243.1-201ENST00000609234 778 ntBASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 AC008556.1-201ENST00000610908 2040 ntBASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCF1Q9UBD9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 AC007952.6-201ENST00000573168 2673 ntBASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 AC003957.1-201ENST00000625108 2673 ntBASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 SEC1P-202ENST00000473944 940 ntBASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 AC034232.1-201ENST00000506026 1064 ntBASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 FAM86EP-206ENST00000510506 987 ntBASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 AC083849.1-201ENST00000615227 514 ntBASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 HYMAI.1-201ENST00000620949 238 ntBASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCF1Q9UBD9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 RASA4DP-201ENST00000460726 1199 ntBASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 AC112497.1-201ENST00000624824 639 ntBASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CLCF1Q9UBD9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms