Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 AL160286.2-201ENST00000567150 934 ntBASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 AC120498.8-201ENST00000614275 531 ntBASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC28BQ9BUN5 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CCDC28BQ9BUN5 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 AC092118.2-201ENST00000613495 667 ntBASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC28BQ9BUN5 AC092368.3-202ENST00000574180 1591 ntBASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 HLA-B-256ENST00000639848 1089 ntBASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 RCC2P6-201ENST00000526625 1557 ntBASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC28BQ9BUN5 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 AC012313.1-201ENST00000593393 3059 ntBASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC28BQ9BUN5 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms