Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 OR10C1-204ENST00000622521 1039 ntBASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC112Q8NEF3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 YBX1P10-201ENST00000444752 975 ntBASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC112Q8NEF3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 AC126763.1-201ENST00000552015 2118 ntBASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 AL390719.1-204ENST00000412397 1219 ntBASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 RAP2CP1-201ENST00000605103 478 ntBASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC112Q8NEF3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC112Q8NEF3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC112Q8NEF3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms