Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC22.99■■□□□ 1.27
USP48Q86UV5 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC22.99■■□□□ 1.27
USP48Q86UV5 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
USP48Q86UV5 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC22.99■■□□□ 1.27
USP48Q86UV5 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC22.99■■□□□ 1.27
USP48Q86UV5 FGF14-AS2-201ENST00000606448 1074 ntBASIC22.99■■□□□ 1.27
USP48Q86UV5 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
USP48Q86UV5 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
USP48Q86UV5 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC22.99■■□□□ 1.27
USP48Q86UV5 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
USP48Q86UV5 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC22.99■■□□□ 1.27
USP48Q86UV5 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC22.99■■□□□ 1.27
USP48Q86UV5 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC22.99■■□□□ 1.27
USP48Q86UV5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.98■■□□□ 1.27
USP48Q86UV5 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
USP48Q86UV5 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.98■■□□□ 1.27
USP48Q86UV5 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.98■■□□□ 1.27
USP48Q86UV5 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 AC004870.1-201ENST00000315132 882 ntBASIC22.98■■□□□ 1.27
USP48Q86UV5 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC22.98■■□□□ 1.27
USP48Q86UV5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.98■■□□□ 1.27
USP48Q86UV5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC22.98■■□□□ 1.27
USP48Q86UV5 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 NEK4P2-201ENST00000580004 1012 ntBASIC22.98■■□□□ 1.27
USP48Q86UV5 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
USP48Q86UV5 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.98■■□□□ 1.27
USP48Q86UV5 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC22.98■■□□□ 1.27
USP48Q86UV5 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 KRT8P10-201ENST00000450021 1447 ntBASIC22.98■■□□□ 1.27
USP48Q86UV5 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
USP48Q86UV5 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC22.97■■□□□ 1.27
USP48Q86UV5 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.97■■□□□ 1.27
USP48Q86UV5 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC22.97■■□□□ 1.27
USP48Q86UV5 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
USP48Q86UV5 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC22.97■■□□□ 1.27
USP48Q86UV5 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC22.97■■□□□ 1.27
USP48Q86UV5 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
USP48Q86UV5 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC22.97■■□□□ 1.27
USP48Q86UV5 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC22.97■■□□□ 1.27
USP48Q86UV5 PTGES2-AS1-201ENST00000443493 2100 ntBASIC22.97■■□□□ 1.27
USP48Q86UV5 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC22.97■■□□□ 1.27
USP48Q86UV5 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
USP48Q86UV5 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.96■■□□□ 1.27
USP48Q86UV5 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC22.96■■□□□ 1.27
USP48Q86UV5 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC22.96■■□□□ 1.27
USP48Q86UV5 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC22.96■■□□□ 1.27
USP48Q86UV5 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.96■■□□□ 1.27
USP48Q86UV5 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC22.96■■□□□ 1.27
USP48Q86UV5 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC22.96■■□□□ 1.27
USP48Q86UV5 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC22.96■■□□□ 1.27
USP48Q86UV5 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC22.96■■□□□ 1.27
USP48Q86UV5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC22.96■■□□□ 1.27
USP48Q86UV5 KRT8P41-201ENST00000533985 1514 ntBASIC22.96■■□□□ 1.27
USP48Q86UV5 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.96■■□□□ 1.27
USP48Q86UV5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
USP48Q86UV5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
USP48Q86UV5 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC22.96■■□□□ 1.27
USP48Q86UV5 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms