Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 AC060814.1-201ENST00000554326 538 ntBASIC11.76□□□□□ -0.53
LINC00643Q86TS7 AC092296.2-201ENST00000589470 999 ntBASIC11.76□□□□□ -0.53
LINC00643Q86TS7 AL499627.2-201ENST00000606283 725 ntBASIC11.76□□□□□ -0.53
LINC00643Q86TS7 BANP-227ENST00000626016 2144 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC00643Q86TS7 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC11.75□□□□□ -0.53
LINC00643Q86TS7 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC00643Q86TS7 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 AC023824.1-201ENST00000562945 2975 ntBASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC00643Q86TS7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms