Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
SH3RF1Q7Z6J0 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 TSPY17P-201ENST00000450329 467 ntBASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 AL353719.1-201ENST00000566847 864 ntBASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SH3RF1Q7Z6J0 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.52■■□□□ 1.04
SH3RF1Q7Z6J0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.03
SH3RF1Q7Z6J0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
SH3RF1Q7Z6J0 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SH3RF1Q7Z6J0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
SH3RF1Q7Z6J0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 VENTXP5-201ENST00000523979 775 ntBASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 FEM1AP3-201ENST00000403722 1741 ntBASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
SH3RF1Q7Z6J0 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 AC246785.2-201ENST00000432512 513 ntBASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 Z85996.1-201ENST00000494644 937 ntBASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms