Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP46P62068 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP46P62068 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP46P62068 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.75■□□□□ 0.75
USP46P62068 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.75■□□□□ 0.75
USP46P62068 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP46P62068 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.75■□□□□ 0.75
USP46P62068 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.75■□□□□ 0.75
USP46P62068 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.75■□□□□ 0.75
USP46P62068 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.75■□□□□ 0.75
USP46P62068 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.75■□□□□ 0.75
USP46P62068 LINC01238-205ENST00000567549 1107 ntBASIC19.75■□□□□ 0.75
USP46P62068 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.75■□□□□ 0.75
USP46P62068 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.75■□□□□ 0.75
USP46P62068 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
USP46P62068 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP46P62068 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP46P62068 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP46P62068 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.74■□□□□ 0.75
USP46P62068 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.74■□□□□ 0.75
USP46P62068 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.74■□□□□ 0.75
USP46P62068 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.74■□□□□ 0.75
USP46P62068 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.74■□□□□ 0.75
USP46P62068 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.74■□□□□ 0.75
USP46P62068 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.74■□□□□ 0.75
USP46P62068 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
USP46P62068 RCC2P3-201ENST00000418112 1537 ntBASIC19.74■□□□□ 0.75
USP46P62068 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.74■□□□□ 0.75
USP46P62068 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.74■□□□□ 0.75
USP46P62068 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
USP46P62068 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
USP46P62068 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
USP46P62068 AC008556.1-201ENST00000610908 2040 ntBASIC19.73■□□□□ 0.75
USP46P62068 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.73■□□□□ 0.75
USP46P62068 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.73■□□□□ 0.75
USP46P62068 HOMER2P1-201ENST00000455653 964 ntBASIC19.73■□□□□ 0.75
USP46P62068 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.73■□□□□ 0.75
USP46P62068 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.73■□□□□ 0.75
USP46P62068 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.73■□□□□ 0.75
USP46P62068 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.73■□□□□ 0.75
USP46P62068 MIR3180-5-201ENST00000583743 153 ntBASIC19.73■□□□□ 0.75
USP46P62068 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
USP46P62068 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.73■□□□□ 0.75
USP46P62068 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
USP46P62068 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.73■□□□□ 0.75
USP46P62068 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 AC116562.4-201ENST00000641316 2276 ntBASIC19.73■□□□□ 0.75
USP46P62068 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USP46P62068 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.72■□□□□ 0.75
USP46P62068 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.72■□□□□ 0.75
USP46P62068 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP46P62068 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
USP46P62068 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.72■□□□□ 0.75
USP46P62068 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 AP000523.1-201ENST00000398242 1049 ntBASIC19.72■□□□□ 0.75
USP46P62068 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.72■□□□□ 0.75
USP46P62068 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.72■□□□□ 0.75
USP46P62068 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.72■□□□□ 0.75
USP46P62068 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.72■□□□□ 0.75
USP46P62068 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.72■□□□□ 0.75
USP46P62068 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP46P62068 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.72■□□□□ 0.75
USP46P62068 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP46P62068 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP46P62068 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP46P62068 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP46P62068 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
USP46P62068 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms