Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIM2P55344 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.83■□□□□ 0.45
LIM2P55344 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIM2P55344 AL512353.2-201ENST00000448759 1962 ntBASIC17.83■□□□□ 0.44
LIM2P55344 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 TSPY14P-201ENST00000303979 915 ntBASIC17.83■□□□□ 0.44
LIM2P55344 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.83■□□□□ 0.44
LIM2P55344 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LIM2P55344 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.83■□□□□ 0.44
LIM2P55344 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.83■□□□□ 0.44
LIM2P55344 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.83■□□□□ 0.44
LIM2P55344 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.83■□□□□ 0.44
LIM2P55344 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.83■□□□□ 0.44
LIM2P55344 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.83■□□□□ 0.44
LIM2P55344 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.83■□□□□ 0.44
LIM2P55344 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.83■□□□□ 0.44
LIM2P55344 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIM2P55344 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
LIM2P55344 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.82■□□□□ 0.44
LIM2P55344 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIM2P55344 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LIM2P55344 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.82■□□□□ 0.44
LIM2P55344 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.82■□□□□ 0.44
LIM2P55344 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
LIM2P55344 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.82■□□□□ 0.44
LIM2P55344 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 CCR12P-201ENST00000446203 998 ntBASIC17.82■□□□□ 0.44
LIM2P55344 TSPY17P-201ENST00000450329 467 ntBASIC17.82■□□□□ 0.44
LIM2P55344 EGLN1P1-201ENST00000531623 762 ntBASIC17.82■□□□□ 0.44
LIM2P55344 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.82■□□□□ 0.44
LIM2P55344 AL353719.1-201ENST00000566847 864 ntBASIC17.82■□□□□ 0.44
LIM2P55344 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.82■□□□□ 0.44
LIM2P55344 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 AC073912.3-201ENST00000624414 853 ntBASIC17.82■□□□□ 0.44
LIM2P55344 AC116562.4-202ENST00000641738 218 ntBASIC17.82■□□□□ 0.44
LIM2P55344 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.82■□□□□ 0.44
LIM2P55344 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.82■□□□□ 0.44
LIM2P55344 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
LIM2P55344 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIM2P55344 KRT8P32-201ENST00000512863 1461 ntBASIC17.82■□□□□ 0.44
LIM2P55344 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LIM2P55344 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
LIM2P55344 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.81■□□□□ 0.44
LIM2P55344 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 AC083906.6-201ENST00000641366 219 ntBASIC17.81■□□□□ 0.44
LIM2P55344 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.81■□□□□ 0.44
LIM2P55344 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.81■□□□□ 0.44
LIM2P55344 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 AC104581.1-202ENST00000635932 2618 ntBASIC17.81■□□□□ 0.44
LIM2P55344 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 AC092338.2-201ENST00000568827 1415 ntBASIC17.81■□□□□ 0.44
LIM2P55344 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.81■□□□□ 0.44
LIM2P55344 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIM2P55344 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIM2P55344 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LIM2P55344 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIM2P55344 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIM2P55344 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms