Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.21■□□□□ 0.67
CDH4P55283 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH4P55283 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH4P55283 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDH4P55283 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CDH4P55283 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.2■□□□□ 0.66
CDH4P55283 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CDH4P55283 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CDH4P55283 RNF152P1-201ENST00000397754 604 ntBASIC19.2■□□□□ 0.66
CDH4P55283 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.2■□□□□ 0.66
CDH4P55283 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.2■□□□□ 0.66
CDH4P55283 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.2■□□□□ 0.66
CDH4P55283 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.2■□□□□ 0.66
CDH4P55283 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.2■□□□□ 0.66
CDH4P55283 AL049597.2-201ENST00000565575 961 ntBASIC19.2■□□□□ 0.66
CDH4P55283 AC011558.1-201ENST00000623459 338 ntBASIC19.2■□□□□ 0.66
CDH4P55283 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.2■□□□□ 0.66
CDH4P55283 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CDH4P55283 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH4P55283 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.19■□□□□ 0.66
CDH4P55283 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CDH4P55283 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.19■□□□□ 0.66
CDH4P55283 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.19■□□□□ 0.66
CDH4P55283 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.19■□□□□ 0.66
CDH4P55283 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CDH4P55283 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 TSPY5P-201ENST00000426936 936 ntBASIC19.19■□□□□ 0.66
CDH4P55283 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CDH4P55283 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.19■□□□□ 0.66
CDH4P55283 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.19■□□□□ 0.66
CDH4P55283 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.19■□□□□ 0.66
CDH4P55283 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.19■□□□□ 0.66
CDH4P55283 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.19■□□□□ 0.66
CDH4P55283 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.19■□□□□ 0.66
CDH4P55283 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.19■□□□□ 0.66
CDH4P55283 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 MTMR9LP-203ENST00000426597 1545 ntBASIC19.19■□□□□ 0.66
CDH4P55283 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.19■□□□□ 0.66
CDH4P55283 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH4P55283 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
CDH4P55283 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.18■□□□□ 0.66
CDH4P55283 AC006333.2-201ENST00000607957 2099 ntBASIC19.18■□□□□ 0.66
CDH4P55283 KRT8P7-201ENST00000533003 1432 ntBASIC19.18■□□□□ 0.66
CDH4P55283 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CDH4P55283 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CDH4P55283 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDH4P55283 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH4P55283 MIR1224-201ENST00000408193 85 ntBASIC19.18■□□□□ 0.66
CDH4P55283 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.18■□□□□ 0.66
CDH4P55283 AL441883.1-201ENST00000566170 1045 ntBASIC19.18■□□□□ 0.66
CDH4P55283 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.18■□□□□ 0.66
CDH4P55283 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CDH4P55283 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDH4P55283 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH4P55283 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDH4P55283 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH4P55283 AC034236.2-201ENST00000606662 1610 ntBASIC19.18■□□□□ 0.66
CDH4P55283 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
CDH4P55283 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.17■□□□□ 0.66
CDH4P55283 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.17■□□□□ 0.66
CDH4P55283 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 AL357033.4-201ENST00000617703 1807 ntBASIC19.17■□□□□ 0.66
CDH4P55283 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CDH4P55283 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH4P55283 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.17■□□□□ 0.66
CDH4P55283 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms