Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHMT2P34897 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.4■□□□□ 0.54
SHMT2P34897 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.4■□□□□ 0.54
SHMT2P34897 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
SHMT2P34897 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SHMT2P34897 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 AC005332.8-201ENST00000622750 2735 ntBASIC18.39■□□□□ 0.53
SHMT2P34897 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.39■□□□□ 0.53
SHMT2P34897 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SHMT2P34897 AL023803.3-201ENST00000615559 522 ntBASIC18.39■□□□□ 0.53
SHMT2P34897 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.39■□□□□ 0.53
SHMT2P34897 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SHMT2P34897 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SHMT2P34897 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHMT2P34897 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SHMT2P34897 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.39■□□□□ 0.53
SHMT2P34897 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.38■□□□□ 0.53
SHMT2P34897 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.38■□□□□ 0.53
SHMT2P34897 FEM1AP3-201ENST00000403722 1741 ntBASIC18.38■□□□□ 0.53
SHMT2P34897 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
SHMT2P34897 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.38■□□□□ 0.53
SHMT2P34897 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.38■□□□□ 0.53
SHMT2P34897 AL353719.1-201ENST00000566847 864 ntBASIC18.38■□□□□ 0.53
SHMT2P34897 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.38■□□□□ 0.53
SHMT2P34897 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
SHMT2P34897 AC010653.2-201ENST00000623505 997 ntBASIC18.38■□□□□ 0.53
SHMT2P34897 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SHMT2P34897 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SHMT2P34897 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SHMT2P34897 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.38■□□□□ 0.53
SHMT2P34897 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHMT2P34897 IRX1P1-201ENST00000438849 1838 ntBASIC18.37■□□□□ 0.53
SHMT2P34897 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 FP475955.4-201ENST00000623131 1990 ntBASIC18.37■□□□□ 0.53
SHMT2P34897 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 AC005363.2-201ENST00000618631 242 ntBASIC18.37■□□□□ 0.53
SHMT2P34897 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SHMT2P34897 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 AC092338.2-201ENST00000568827 1415 ntBASIC18.37■□□□□ 0.53
SHMT2P34897 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.37■□□□□ 0.53
SHMT2P34897 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.37■□□□□ 0.53
SHMT2P34897 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.37■□□□□ 0.53
SHMT2P34897 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SHMT2P34897 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SHMT2P34897 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHMT2P34897 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.36■□□□□ 0.53
SHMT2P34897 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.36■□□□□ 0.53
SHMT2P34897 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SHMT2P34897 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.36■□□□□ 0.53
SHMT2P34897 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.36■□□□□ 0.53
SHMT2P34897 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SHMT2P34897 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.36■□□□□ 0.53
SHMT2P34897 AC007663.1-201ENST00000438948 1240 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms