Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.56■■□□□ 1.04
SMARCA1P28370 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SMARCA1P28370 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 FAM8A6P-201ENST00000407496 1135 ntBASIC21.56■■□□□ 1.04
SMARCA1P28370 KRT18P23-201ENST00000435622 1283 ntBASIC21.56■■□□□ 1.04
SMARCA1P28370 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 HOMER2P1-201ENST00000455653 964 ntBASIC21.56■■□□□ 1.04
SMARCA1P28370 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 GCSHP2-201ENST00000560971 527 ntBASIC21.56■■□□□ 1.04
SMARCA1P28370 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.56■■□□□ 1.04
SMARCA1P28370 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 AC018445.3-201ENST00000624177 1945 ntBASIC21.56■■□□□ 1.04
SMARCA1P28370 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
SMARCA1P28370 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
SMARCA1P28370 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.56■■□□□ 1.04
SMARCA1P28370 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.56■■□□□ 1.04
SMARCA1P28370 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.55■■□□□ 1.04
SMARCA1P28370 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.55■■□□□ 1.04
SMARCA1P28370 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.55■■□□□ 1.04
SMARCA1P28370 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
SMARCA1P28370 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 AL031598.1-201ENST00000561511 1773 ntBASIC21.55■■□□□ 1.04
SMARCA1P28370 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
SMARCA1P28370 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.55■■□□□ 1.04
SMARCA1P28370 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.55■■□□□ 1.04
SMARCA1P28370 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SMARCA1P28370 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SMARCA1P28370 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SMARCA1P28370 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.55■■□□□ 1.04
SMARCA1P28370 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SMARCA1P28370 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCA1P28370 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCA1P28370 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.54■■□□□ 1.04
SMARCA1P28370 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.54■■□□□ 1.04
SMARCA1P28370 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCA1P28370 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCA1P28370 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SMARCA1P28370 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.54■■□□□ 1.04
SMARCA1P28370 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.54■■□□□ 1.04
SMARCA1P28370 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SMARCA1P28370 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.54■■□□□ 1.04
SMARCA1P28370 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.54■■□□□ 1.04
SMARCA1P28370 CROCCP3-202ENST00000420820 1947 ntBASIC21.54■■□□□ 1.04
SMARCA1P28370 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
SMARCA1P28370 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
SMARCA1P28370 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.53■■□□□ 1.04
SMARCA1P28370 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
SMARCA1P28370 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 STARP1-201ENST00000397973 869 ntBASIC21.53■■□□□ 1.04
SMARCA1P28370 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.53■■□□□ 1.04
SMARCA1P28370 AL049597.2-201ENST00000565575 961 ntBASIC21.53■■□□□ 1.04
SMARCA1P28370 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
SMARCA1P28370 MYC-208ENST00000641036 567 ntBASIC21.53■■□□□ 1.04
SMARCA1P28370 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.53■■□□□ 1.04
SMARCA1P28370 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.53■■□□□ 1.04
SMARCA1P28370 AC112777.1-201ENST00000540175 1423 ntBASIC21.53■■□□□ 1.04
SMARCA1P28370 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SMARCA1P28370 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SMARCA1P28370 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
SMARCA1P28370 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.53■■□□□ 1.04
SMARCA1P28370 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.52■■□□□ 1.04
SMARCA1P28370 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.52■■□□□ 1.04
SMARCA1P28370 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.52■■□□□ 1.04
SMARCA1P28370 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SMARCA1P28370 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.52■■□□□ 1.04
SMARCA1P28370 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.52■■□□□ 1.04
SMARCA1P28370 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.52■■□□□ 1.04
SMARCA1P28370 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.52■■□□□ 1.04
SMARCA1P28370 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.52■■□□□ 1.04
SMARCA1P28370 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms