Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.8■□□□□ 0.76
BDNFP23560 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.8■□□□□ 0.76
BDNFP23560 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.8■□□□□ 0.76
BDNFP23560 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.8■□□□□ 0.76
BDNFP23560 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BDNFP23560 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.79■□□□□ 0.76
BDNFP23560 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.79■□□□□ 0.76
BDNFP23560 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.79■□□□□ 0.76
BDNFP23560 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.79■□□□□ 0.76
BDNFP23560 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.79■□□□□ 0.76
BDNFP23560 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.79■□□□□ 0.76
BDNFP23560 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.79■□□□□ 0.76
BDNFP23560 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.79■□□□□ 0.76
BDNFP23560 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.79■□□□□ 0.76
BDNFP23560 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
BDNFP23560 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.79■□□□□ 0.76
BDNFP23560 MYC-208ENST00000641036 567 ntBASIC19.79■□□□□ 0.76
BDNFP23560 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BDNFP23560 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.79■□□□□ 0.76
BDNFP23560 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.78■□□□□ 0.76
BDNFP23560 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
BDNFP23560 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
BDNFP23560 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
BDNFP23560 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.78■□□□□ 0.76
BDNFP23560 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
BDNFP23560 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.78■□□□□ 0.76
BDNFP23560 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.78■□□□□ 0.76
BDNFP23560 AC068587.9-201ENST00000641814 219 ntBASIC19.78■□□□□ 0.76
BDNFP23560 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.78■□□□□ 0.76
BDNFP23560 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.78■□□□□ 0.76
BDNFP23560 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
BDNFP23560 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.78■□□□□ 0.76
BDNFP23560 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BDNFP23560 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.77■□□□□ 0.76
BDNFP23560 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.77■□□□□ 0.76
BDNFP23560 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
BDNFP23560 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.77■□□□□ 0.76
BDNFP23560 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.77■□□□□ 0.76
BDNFP23560 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
BDNFP23560 AL031133.1-201ENST00000406807 723 ntBASIC19.77■□□□□ 0.76
BDNFP23560 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.77■□□□□ 0.76
BDNFP23560 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.77■□□□□ 0.76
BDNFP23560 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.77■□□□□ 0.76
BDNFP23560 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.77■□□□□ 0.76
BDNFP23560 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.77■□□□□ 0.76
BDNFP23560 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BDNFP23560 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.77■□□□□ 0.76
BDNFP23560 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
BDNFP23560 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
BDNFP23560 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
BDNFP23560 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
BDNFP23560 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms