Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
COL5A1P20908 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.04■□□□□ 0.48
COL5A1P20908 SAPCD2P3-201ENST00000455031 850 ntBASIC18.04■□□□□ 0.48
COL5A1P20908 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.04■□□□□ 0.48
COL5A1P20908 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A1P20908 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL5A1P20908 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL5A1P20908 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.04■□□□□ 0.48
COL5A1P20908 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 RCC2P3-201ENST00000418112 1537 ntBASIC18.04■□□□□ 0.48
COL5A1P20908 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL5A1P20908 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL5A1P20908 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A1P20908 AKR1C7P-201ENST00000305623 895 ntBASIC18.03■□□□□ 0.48
COL5A1P20908 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
COL5A1P20908 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.03■□□□□ 0.48
COL5A1P20908 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.03■□□□□ 0.48
COL5A1P20908 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.03■□□□□ 0.48
COL5A1P20908 REXO1L6P-202ENST00000619970 1078 ntBASIC18.03■□□□□ 0.48
COL5A1P20908 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL5A1P20908 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 KRT89P-201ENST00000620027 1478 ntBASIC18.03■□□□□ 0.48
COL5A1P20908 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL5A1P20908 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A1P20908 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A1P20908 AP003733.1-201ENST00000491725 852 ntBASIC18.02■□□□□ 0.48
COL5A1P20908 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
COL5A1P20908 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.02■□□□□ 0.48
COL5A1P20908 TEX21P-204ENST00000641479 1693 ntBASIC18.02■□□□□ 0.48
COL5A1P20908 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A1P20908 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL5A1P20908 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL5A1P20908 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL5A1P20908 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.02■□□□□ 0.47
COL5A1P20908 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.02■□□□□ 0.47
COL5A1P20908 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.02■□□□□ 0.47
COL5A1P20908 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.02■□□□□ 0.47
COL5A1P20908 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.02■□□□□ 0.47
COL5A1P20908 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.02■□□□□ 0.47
COL5A1P20908 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
COL5A1P20908 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL5A1P20908 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL5A1P20908 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A1P20908 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A1P20908 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A1P20908 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A1P20908 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A1P20908 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
COL5A1P20908 IGHV3-47-201ENST00000425060 335 ntBASIC18.01■□□□□ 0.47
COL5A1P20908 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A1P20908 MIR3180-4-201ENST00000582223 153 ntBASIC18.01■□□□□ 0.47
COL5A1P20908 AL353801.3-201ENST00000609898 542 ntBASIC18.01■□□□□ 0.47
COL5A1P20908 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A1P20908 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A1P20908 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A1P20908 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL5A1P20908 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.01■□□□□ 0.47
COL5A1P20908 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A1P20908 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.01■□□□□ 0.47
COL5A1P20908 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
COL5A1P20908 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
COL5A1P20908 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18■□□□□ 0.47
COL5A1P20908 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
COL5A1P20908 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18■□□□□ 0.47
COL5A1P20908 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18■□□□□ 0.47
COL5A1P20908 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18■□□□□ 0.47
COL5A1P20908 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18■□□□□ 0.47
COL5A1P20908 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18■□□□□ 0.47
COL5A1P20908 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18■□□□□ 0.47
COL5A1P20908 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18■□□□□ 0.47
COL5A1P20908 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 PWWP2AP1-201ENST00000429776 2273 ntBASIC18■□□□□ 0.47
COL5A1P20908 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
COL5A1P20908 VENTXP7-201ENST00000475503 772 ntBASIC18■□□□□ 0.47
COL5A1P20908 RNA5SP419-201ENST00000515908 135 ntBASIC18■□□□□ 0.47
COL5A1P20908 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
COL5A1P20908 TP73-AS1-207ENST00000624167 988 ntBASIC18■□□□□ 0.47
COL5A1P20908 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms