Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.56■■□□□ 1.04
MBD3O95983 AC133552.2-202ENST00000575694 574 ntBASIC21.56■■□□□ 1.04
MBD3O95983 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.56■■□□□ 1.04
MBD3O95983 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.56■■□□□ 1.04
MBD3O95983 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MBD3O95983 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.56■■□□□ 1.04
MBD3O95983 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.56■■□□□ 1.04
MBD3O95983 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MBD3O95983 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
MBD3O95983 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.55■■□□□ 1.04
MBD3O95983 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
MBD3O95983 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.55■■□□□ 1.04
MBD3O95983 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.55■■□□□ 1.04
MBD3O95983 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
MBD3O95983 SIRPAP1-201ENST00000448467 1770 ntBASIC21.55■■□□□ 1.04
MBD3O95983 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
MBD3O95983 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.55■■□□□ 1.04
MBD3O95983 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MBD3O95983 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
MBD3O95983 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
MBD3O95983 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.54■■□□□ 1.04
MBD3O95983 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.54■■□□□ 1.04
MBD3O95983 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.54■■□□□ 1.04
MBD3O95983 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.54■■□□□ 1.04
MBD3O95983 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.54■■□□□ 1.04
MBD3O95983 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.54■■□□□ 1.04
MBD3O95983 AC138028.4-201ENST00000564984 1845 ntBASIC21.54■■□□□ 1.04
MBD3O95983 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.54■■□□□ 1.04
MBD3O95983 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MBD3O95983 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
MBD3O95983 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.53■■□□□ 1.04
MBD3O95983 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.53■■□□□ 1.04
MBD3O95983 RCC2P6-201ENST00000526625 1557 ntBASIC21.53■■□□□ 1.04
MBD3O95983 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.53■■□□□ 1.04
MBD3O95983 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.53■■□□□ 1.04
MBD3O95983 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.53■■□□□ 1.04
MBD3O95983 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.53■■□□□ 1.04
MBD3O95983 KRT18P5-201ENST00000436075 1291 ntBASIC21.53■■□□□ 1.04
MBD3O95983 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.53■■□□□ 1.04
MBD3O95983 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.53■■□□□ 1.04
MBD3O95983 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
MBD3O95983 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
MBD3O95983 AC093677.2-201ENST00000600169 1863 ntBASIC21.53■■□□□ 1.04
MBD3O95983 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
MBD3O95983 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MBD3O95983 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.53■■□□□ 1.04
MBD3O95983 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MBD3O95983 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.52■■□□□ 1.04
MBD3O95983 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MBD3O95983 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MBD3O95983 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
MBD3O95983 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
MBD3O95983 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MBD3O95983 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.52■■□□□ 1.04
MBD3O95983 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.52■■□□□ 1.04
MBD3O95983 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.52■■□□□ 1.04
MBD3O95983 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.52■■□□□ 1.04
MBD3O95983 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.52■■□□□ 1.04
MBD3O95983 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.52■■□□□ 1.04
MBD3O95983 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.52■■□□□ 1.04
MBD3O95983 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MBD3O95983 HTR7P1-202ENST00000624664 4411 ntBASIC21.52■■□□□ 1.04
MBD3O95983 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
MBD3O95983 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.52■■□□□ 1.04
MBD3O95983 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MBD3O95983 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.52■■□□□ 1.04
MBD3O95983 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MBD3O95983 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
MBD3O95983 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms