Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.68■□□□□ 0.42
LDB3O75112 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.68■□□□□ 0.42
LDB3O75112 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB3O75112 MIR4674-201ENST00000582457 87 ntBASIC17.68■□□□□ 0.42
LDB3O75112 AC145285.6-201ENST00000604632 637 ntBASIC17.68■□□□□ 0.42
LDB3O75112 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 AC004408.2-201ENST00000623613 2777 ntBASIC17.68■□□□□ 0.42
LDB3O75112 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB3O75112 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LDB3O75112 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
LDB3O75112 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LDB3O75112 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LDB3O75112 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LDB3O75112 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LDB3O75112 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDB3O75112 AL023284.2-201ENST00000405850 579 ntBASIC17.67■□□□□ 0.42
LDB3O75112 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LDB3O75112 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.67■□□□□ 0.42
LDB3O75112 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.67■□□□□ 0.42
LDB3O75112 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LDB3O75112 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
LDB3O75112 AC083906.6-201ENST00000641366 219 ntBASIC17.67■□□□□ 0.42
LDB3O75112 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LDB3O75112 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.67■□□□□ 0.42
LDB3O75112 HEIH-201ENST00000623091 1652 ntBASIC17.67■□□□□ 0.42
LDB3O75112 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDB3O75112 KRT18P22-201ENST00000402024 1347 ntBASIC17.67■□□□□ 0.42
LDB3O75112 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
LDB3O75112 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LDB3O75112 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LDB3O75112 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
LDB3O75112 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 AC093503.3-201ENST00000624917 2352 ntBASIC17.66■□□□□ 0.42
LDB3O75112 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.66■□□□□ 0.42
LDB3O75112 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.66■□□□□ 0.42
LDB3O75112 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LDB3O75112 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.66■□□□□ 0.42
LDB3O75112 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 AC068587.9-201ENST00000641814 219 ntBASIC17.66■□□□□ 0.42
LDB3O75112 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LDB3O75112 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LDB3O75112 AC008556.1-201ENST00000610908 2040 ntBASIC17.65■□□□□ 0.42
LDB3O75112 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.65■□□□□ 0.42
LDB3O75112 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.65■□□□□ 0.42
LDB3O75112 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 AC020763.4-201ENST00000623414 4170 ntBASIC17.65■□□□□ 0.42
LDB3O75112 CROCCP3-202ENST00000420820 1947 ntBASIC17.65■□□□□ 0.42
LDB3O75112 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.65■□□□□ 0.42
LDB3O75112 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 ECEL1P3-201ENST00000427961 737 ntBASIC17.65■□□□□ 0.42
LDB3O75112 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.65■□□□□ 0.42
LDB3O75112 MCCD1P1-208ENST00000445732 328 ntBASIC17.65■□□□□ 0.42
LDB3O75112 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.65■□□□□ 0.42
LDB3O75112 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.65■□□□□ 0.42
LDB3O75112 FAM87A-204ENST00000613235 858 ntBASIC17.65■□□□□ 0.42
LDB3O75112 AC010653.2-201ENST00000623505 997 ntBASIC17.65■□□□□ 0.42
LDB3O75112 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LDB3O75112 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.65■□□□□ 0.42
LDB3O75112 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.65■□□□□ 0.42
LDB3O75112 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LDB3O75112 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LDB3O75112 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.64■□□□□ 0.42
LDB3O75112 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
LDB3O75112 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.64■□□□□ 0.41
LDB3O75112 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.64■□□□□ 0.41
LDB3O75112 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms