Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
SSSCA1O60232 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC15.34■□□□□ 0.05
SSSCA1O60232 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
SSSCA1O60232 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.33■□□□□ 0.05
SSSCA1O60232 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
SSSCA1O60232 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
SSSCA1O60232 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
SSSCA1O60232 AC139713.2-201ENST00000641328 2723 ntBASIC15.33■□□□□ 0.05
SSSCA1O60232 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
SSSCA1O60232 ESPNP-201ENST00000270691 2015 ntBASIC15.33■□□□□ 0.04
SSSCA1O60232 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
SSSCA1O60232 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.33■□□□□ 0.04
SSSCA1O60232 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SSSCA1O60232 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SSSCA1O60232 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.33■□□□□ 0.04
SSSCA1O60232 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC15.33■□□□□ 0.04
SSSCA1O60232 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.33■□□□□ 0.04
SSSCA1O60232 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
SSSCA1O60232 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.33■□□□□ 0.04
SSSCA1O60232 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SSSCA1O60232 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 LSM12P1-201ENST00000411836 588 ntBASIC15.32■□□□□ 0.04
SSSCA1O60232 YBX1P10-201ENST00000444752 975 ntBASIC15.32■□□□□ 0.04
SSSCA1O60232 HES2-206ENST00000489730 730 ntTSL 2 BASIC15.32■□□□□ 0.04
SSSCA1O60232 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC15.32■□□□□ 0.04
SSSCA1O60232 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC15.32■□□□□ 0.04
SSSCA1O60232 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC15.32■□□□□ 0.04
SSSCA1O60232 WWOX-218ENST00000627394 894 ntTSL 5 BASIC15.32■□□□□ 0.04
SSSCA1O60232 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
SSSCA1O60232 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SSSCA1O60232 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC15.32■□□□□ 0.04
SSSCA1O60232 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SSSCA1O60232 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 AP006587.1-201ENST00000534129 1502 ntBASIC15.32■□□□□ 0.04
SSSCA1O60232 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SSSCA1O60232 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.31■□□□□ 0.04
SSSCA1O60232 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
SSSCA1O60232 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC15.31■□□□□ 0.04
SSSCA1O60232 AC124283.5-201ENST00000624661 1809 ntBASIC15.31■□□□□ 0.04
SSSCA1O60232 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.31■□□□□ 0.04
SSSCA1O60232 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
SSSCA1O60232 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SSSCA1O60232 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.31■□□□□ 0.04
SSSCA1O60232 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SSSCA1O60232 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC15.31■□□□□ 0.04
SSSCA1O60232 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.31■□□□□ 0.04
SSSCA1O60232 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
SSSCA1O60232 OR10C1-204ENST00000622521 1039 ntBASIC15.31■□□□□ 0.04
SSSCA1O60232 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SSSCA1O60232 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SSSCA1O60232 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms