Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 AL353708.3-201ENST00000610272 989 ntBASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 KRT8P3-201ENST00000519669 1449 ntBASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.13■□□□□ 0.65
TCRBV7S3A2A0A539 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 PRSS44-201ENST00000515154 1146 ntBASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.12■□□□□ 0.65
TCRBV7S3A2A0A539 AL357033.4-201ENST00000617703 1807 ntBASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 KSR1P1-201ENST00000446298 240 ntBASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 CR392000.1-201ENST00000624770 1228 ntBASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 ABALON-201ENST00000629058 1903 ntBASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TCRBV7S3A2A0A539 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 AC004951.3-201ENST00000418645 1148 ntBASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 RPPH1-201ENST00000516869 333 ntBASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 CD99P1-205ENST00000527459 561 ntBASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 AC068880.1-201ENST00000507289 2297 ntBASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TCRBV7S3A2A0A539 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TCRBV7S3A2A0A539 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
TCRBV7S3A2A0A539 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.09■□□□□ 0.65
TCRBV7S3A2A0A539 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
TCRBV7S3A2A0A539 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.09■□□□□ 0.65
TCRBV7S3A2A0A539 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms