Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.69□□□□□ -0.06
TRAV1-1A0A0B4J248 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 REXO1L9P-201ENST00000604264 2108 ntBASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 AC007322.4-201ENST00000509611 723 ntBASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 AL499627.1-201ENST00000569373 2188 ntBASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 AC011676.5-201ENST00000624864 2660 ntBASIC14.68□□□□□ -0.06
TRAV1-1A0A0B4J248 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 AL023806.1-201ENST00000603994 1649 ntBASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 OR6D1P-202ENST00000641007 5290 ntBASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 TSPY21P-201ENST00000433481 731 ntBASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 PP12613-201ENST00000424958 2230 ntBASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRAV1-1A0A0B4J248 AC112777.1-201ENST00000540175 1423 ntBASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 AC022211.2-201ENST00000585075 2527 ntBASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms