Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USH1CQ9Y6N9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
USH1CQ9Y6N9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 GNAS-203ENST00000306120 1878 ntBASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 AC126763.1-201ENST00000552015 2118 ntBASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USH1CQ9Y6N9 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
USH1CQ9Y6N9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 SIRPAP1-201ENST00000448467 1770 ntBASIC18.71■□□□□ 0.59
USH1CQ9Y6N9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms