Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.56□□□□□ -0.08
CCDC140Q96MF4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CCDC140Q96MF4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 GPAT2P1-201ENST00000444924 1672 ntBASIC14.55□□□□□ -0.08
CCDC140Q96MF4 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC14.55□□□□□ -0.08
CCDC140Q96MF4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 HIST1H2APS4-201ENST00000362070 348 ntBASIC14.54□□□□□ -0.08
CCDC140Q96MF4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 WIZP1-201ENST00000531444 2299 ntBASIC14.54□□□□□ -0.08
CCDC140Q96MF4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC140Q96MF4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AC008556.1-201ENST00000610908 2040 ntBASIC14.53□□□□□ -0.08
CCDC140Q96MF4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC140Q96MF4 AL109659.2-201ENST00000606809 1674 ntBASIC14.53□□□□□ -0.08
CCDC140Q96MF4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms