Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC11.65□□□□□ -0.54
HSPG2P98160 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC11.65□□□□□ -0.54
HSPG2P98160 AC092364.2-202ENST00000597012 1073 ntBASIC11.65□□□□□ -0.54
HSPG2P98160 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC11.65□□□□□ -0.54
HSPG2P98160 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
HSPG2P98160 MED16-201ENST00000269814 1199 ntTSL 5 BASIC11.65□□□□□ -0.54
HSPG2P98160 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC11.65□□□□□ -0.54
HSPG2P98160 YBX1P5-201ENST00000509441 847 ntBASIC11.65□□□□□ -0.54
HSPG2P98160 UNC93B6-202ENST00000528242 690 ntBASIC11.65□□□□□ -0.54
HSPG2P98160 GREM1-201ENST00000560677 623 ntTSL 4 BASIC11.65□□□□□ -0.54
HSPG2P98160 AC024563.2-201ENST00000603282 481 ntBASIC11.65□□□□□ -0.54
HSPG2P98160 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC11.65□□□□□ -0.54
HSPG2P98160 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC11.65□□□□□ -0.54
HSPG2P98160 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
HSPG2P98160 AC023274.1-201ENST00000418278 595 ntBASIC11.65□□□□□ -0.54
HSPG2P98160 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC11.65□□□□□ -0.54
HSPG2P98160 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC11.65□□□□□ -0.54
HSPG2P98160 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC11.65□□□□□ -0.54
HSPG2P98160 COPE-211ENST00000600932 1144 ntTSL 5 BASIC11.65□□□□□ -0.54
HSPG2P98160 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.65□□□□□ -0.54
HSPG2P98160 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HSPG2P98160 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HSPG2P98160 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.55
HSPG2P98160 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.55
HSPG2P98160 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC11.65□□□□□ -0.55
HSPG2P98160 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC11.65□□□□□ -0.55
HSPG2P98160 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC11.64□□□□□ -0.55
HSPG2P98160 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC11.64□□□□□ -0.55
HSPG2P98160 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC11.64□□□□□ -0.55
HSPG2P98160 KRT18P28-201ENST00000453838 1332 ntBASIC11.64□□□□□ -0.55
HSPG2P98160 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC11.64□□□□□ -0.55
HSPG2P98160 MIR4469-201ENST00000583919 79 ntBASIC11.64□□□□□ -0.55
HSPG2P98160 GPR32P1-201ENST00000601788 811 ntBASIC11.64□□□□□ -0.55
HSPG2P98160 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC11.64□□□□□ -0.55
HSPG2P98160 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC11.64□□□□□ -0.55
HSPG2P98160 AP005212.1-201ENST00000581547 1997 ntBASIC11.64□□□□□ -0.55
HSPG2P98160 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC11.64□□□□□ -0.55
HSPG2P98160 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC11.64□□□□□ -0.55
HSPG2P98160 VENTXP7-201ENST00000475503 772 ntBASIC11.64□□□□□ -0.55
HSPG2P98160 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC11.64□□□□□ -0.55
HSPG2P98160 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HSPG2P98160 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC11.64□□□□□ -0.55
HSPG2P98160 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 RBSN-204ENST00000449050 903 ntTSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 KIRREL3-AS3-201ENST00000404882 831 ntBASIC11.63□□□□□ -0.55
HSPG2P98160 NUS1P2-201ENST00000417358 873 ntBASIC11.63□□□□□ -0.55
HSPG2P98160 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC11.63□□□□□ -0.55
HSPG2P98160 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC11.63□□□□□ -0.55
HSPG2P98160 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
HSPG2P98160 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC11.63□□□□□ -0.55
HSPG2P98160 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC11.63□□□□□ -0.55
HSPG2P98160 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC11.63□□□□□ -0.55
HSPG2P98160 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC11.63□□□□□ -0.55
HSPG2P98160 Z83851.2-201ENST00000609564 659 ntBASIC11.63□□□□□ -0.55
HSPG2P98160 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC11.63□□□□□ -0.55
HSPG2P98160 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HSPG2P98160 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC11.63□□□□□ -0.55
HSPG2P98160 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms