Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 KRT17P6-201ENST00000453795 1220 ntBASIC21.73■■□□□ 1.07
HMGCS2P54868 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
HMGCS2P54868 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HMGCS2P54868 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
HMGCS2P54868 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HMGCS2P54868 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
HMGCS2P54868 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
HMGCS2P54868 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGCS2P54868 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
HMGCS2P54868 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGCS2P54868 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 KRT8P10-201ENST00000450021 1447 ntBASIC21.72■■□□□ 1.07
HMGCS2P54868 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HMGCS2P54868 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGCS2P54868 MIR564-202ENST00000385049 94 ntBASIC21.72■■□□□ 1.07
HMGCS2P54868 TSPY19P-201ENST00000418461 509 ntBASIC21.72■■□□□ 1.07
HMGCS2P54868 TSPY18P-201ENST00000441642 509 ntBASIC21.72■■□□□ 1.07
HMGCS2P54868 EMBP1-201ENST00000458200 901 ntBASIC21.72■■□□□ 1.07
HMGCS2P54868 TOB2P1-201ENST00000469761 992 ntBASIC21.72■■□□□ 1.07
HMGCS2P54868 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGCS2P54868 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.72■■□□□ 1.07
HMGCS2P54868 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.72■■□□□ 1.07
HMGCS2P54868 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGCS2P54868 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC21.72■■□□□ 1.07
HMGCS2P54868 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGCS2P54868 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGCS2P54868 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HMGCS2P54868 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGCS2P54868 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGCS2P54868 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGCS2P54868 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGCS2P54868 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGCS2P54868 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
HMGCS2P54868 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGCS2P54868 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGCS2P54868 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
HMGCS2P54868 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGCS2P54868 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
HMGCS2P54868 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
HMGCS2P54868 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 FOSL1P1-201ENST00000511041 816 ntBASIC21.7■■□□□ 1.06
HMGCS2P54868 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGCS2P54868 AC005332.3-201ENST00000589904 676 ntBASIC21.7■■□□□ 1.06
HMGCS2P54868 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.7■■□□□ 1.06
HMGCS2P54868 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGCS2P54868 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGCS2P54868 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGCS2P54868 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGCS2P54868 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HMGCS2P54868 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGCS2P54868 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
HMGCS2P54868 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
HMGCS2P54868 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms